Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7f15
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   9.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   9.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 261 WARYERGAEKSTP 299
           W +Y  GAE +TP
Sbjct: 28  WTKYPFGAEANTP 40


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 87  ISALDSFNCIYYLVEVFDTWSFFLN 13
           + A+DS N + Y+V+  +T   + N
Sbjct: 192 VQAMDSTNTMVYMVDNKNTLIIYQN 216


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 87  ISALDSFNCIYYLVEVFDTWSFFLNFF*F 1
           IS L  +  + Y     D+W    NFF F
Sbjct: 191 ISDLSGYALVVYSWAKNDSWRITHNFFYF 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,506
Number of Sequences: 438
Number of extensions: 1773
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)