Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7f12
         (487 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    24   0.84 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 96  LLKIRPSMLPSWTSTQFPDSNWKN 167
           L K  P ++  W+  +    NWKN
Sbjct: 281 LAKSWPQLIEKWSRVEMALDNWKN 304


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 66  MASVRLVLKYLLKIRPSMLPSWTSTQFPDSNWKN 167
           +A+ RL+  +   I+P  + S   TQF  + W+N
Sbjct: 242 IAAKRLIEDFSGYIKPKCVLSDHGTQFISNTWQN 275


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 155 KLEKHLNTTYGDGKVKFYK 211
           +L KH+ TTY    ++F K
Sbjct: 339 RLNKHVTTTYPKQPLRFGK 357


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 103 FNKYFNTKRTDAISTARNNYNFVVYFTH 20
           FN+++N +R    ST  N  + ++ + H
Sbjct: 610 FNEFYNQRRRWMPSTMANILDLLMDYEH 637


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 103 FNKYFNTKRTDAISTARNNYNFVVYFTH 20
           FN+++N +R    ST  N  + ++ + H
Sbjct: 843 FNEFYNQRRRWMPSTMANILDLLMDYEH 870


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 103 FNKYFNTKRTDAISTARNNYNFVVYFTH 20
           FN+++N +R    ST  N  + ++ + H
Sbjct: 843 FNEFYNQRRRWMPSTMANILDLLMDYEH 870


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,252
Number of Sequences: 336
Number of extensions: 2568
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)