Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7f10
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    27   1.9  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   5.9  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   5.9  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   7.9  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   7.9  

>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 1/162 (0%)
 Frame = +3

Query: 81  EKYLYIKENATVEPVLAFYVIPSVLTKLASQNLSLDKACRVNKNYGEEICDALLNREGTK 260
           EK L +K +  + P++ F  + + L +    N ++         YGE + +  ++     
Sbjct: 50  EKKLLLKMDLVISPIIGFLYLMAFLDRSNIGNAAVAGMTEALSLYGERL-NVAVSIFYVL 108

Query: 261 YLKEELDIQELIAGIETWKNVLLTAMP-SFLILFLGAWSDRTGKRKMCILLPIIGELLAC 437
           Y+  E     L+  I+  + +   +   S  +LF G  S   G   +     I+G L  C
Sbjct: 109 YILVETPSVVLVKRIKASRMLAFISFAWSMTVLFSGFMSSYGG---LIATRLILGLLEGC 165

Query: 438 ISNLVNTYFFYELPVEVMAFFEAFLPAVTGGWVATYMGVFSY 563
           +   +N Y       +      ++L A + G    + G+F+Y
Sbjct: 166 LFPALNLYLTTHYTRKEQCQRLSYLFA-SAGLAGAFGGLFAY 206


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 9   ISFPTKMAELEPLKAEVPDKKTLKEK---YLYIKENATVEPVLAFYVIPSVLTKLASQN 176
           IS+   M+ L P      +   L+ K   YLY+K  A+V+P  A   +  +L  + S N
Sbjct: 42  ISYGYDMSSLFPSVISSMESNNLELKKLCYLYLKIYASVKPTEAKRAVKLILNDIYSSN 100


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 334 AVNNTFFHVSIPA--ISSWMSNSSFKYFVPSLFRRASQISSP*FLL 203
           A  +T  HVS+ A   SS+  NSS   F+  LF+  S   S  F L
Sbjct: 201 AAESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSPSYSKTFFL 246


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 438 YMREALLLLVREYTFFSFPFCHSTLREKVLRNLASLLIIHFSMFLY 301
           Y+R ++L+     T FSF    S +       L +L  I +S FLY
Sbjct: 634 YLRYSILMGSIGITLFSFAKTRSGILGAASFTLVALFAIFYSTFLY 679


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 479 GRSHGVF*SFLTGCYWWVGCYLYGSVQLYQ*CV 577
           G+  G    FL   YWWV  +LY +  L   C+
Sbjct: 188 GKESGTISQFLPEGYWWV--FLYTTCVLAMCCI 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,681
Number of Sequences: 5004
Number of extensions: 57793
Number of successful extensions: 189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)