Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7e19
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    53   4e-08
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    27   1.9  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.6  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    27   3.4  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    27   3.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.8  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 26/60 (43%), Positives = 34/60 (56%)
 Frame = +1

Query: 502 KSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAM 681
           KSIR AF+RKVYAIL  QL VT  F  +F  H     WV  +P+   + F + +V L  +
Sbjct: 52  KSIRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGL 111


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 WTVPTGWRLPARWSLPSRRSVSPGWSIP 365
           W V +   +P+RW   +   ++P W IP
Sbjct: 350 WNVYSKKDIPSRWHYSNNERIAPVWMIP 377



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +3

Query: 165 GF-GKTKLEGPTKLREHVSESRRTVPSGRG--VPARWTVPARWTVPTGWRLPARWSLPSR 335
           GF G++ L+        V+ SR ++PS     V ++  +P+RW      R+   W +P  
Sbjct: 320 GFRGESDLDDEYIYESLVNYSRSSLPSAENWNVYSKKDIPSRWHYSNNERIAPVWMIP-- 377

Query: 336 RSVSPGWSI 362
                GWS+
Sbjct: 378 ---DVGWSL 383


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/80 (22%), Positives = 31/80 (38%)
 Frame = +3

Query: 171 GKTKLEGPTKLREHVSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSP 350
           G   L   + L      +  + P    VP   ++ +  T+PT   +P   S P+  S+  
Sbjct: 76  GSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135

Query: 351 GWSIPAGRICAPSAWLPTCI 410
             +IP+    + S    T I
Sbjct: 136 NSTIPSSSSISASTITTTII 155


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 624 KSLHVLGGLHSADSLSHR 677
           K+LH LGGLHS   LS R
Sbjct: 335 KNLHRLGGLHSDSPLSKR 352


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/52 (21%), Positives = 21/52 (40%)
 Frame = -2

Query: 648 GHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESPAYRFFSE 493
           G+P+   ++ +         E+  ET RH    H  +    + S +Y  F +
Sbjct: 122 GYPDDRALMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFED 173


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -2

Query: 399 EARLRGRISALRVCSTRGIRSSWRVSSTLRVTSTLWVRSTLRV 271
           EA++R R++ + +   RG+     +   +++   LWV   + V
Sbjct: 853 EAKIRSRVNLIALSLERGLGIIRSLGEAVQLAPALWVEDAIDV 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,393
Number of Sequences: 5004
Number of extensions: 57506
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)