Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7e19
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    29   0.042
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.68 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.8  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +2

Query: 224 KADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD-MRPLSLAS 400
           + DR  R  R  ++DR   +DRT ++    +++   + +R+ R++ T R D M  ++   
Sbjct: 485 RMDRMDRMDRMDRMDRMDTMDRTDKMS---RIDRMDKIDRMDRMDRTNRMDRMNRMNRQM 541

Query: 401 NLHMAAL 421
           N +M AL
Sbjct: 542 NEYMMAL 548



 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = +2

Query: 224 KADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD 376
           + +R  R  R  ++DR  ++DR   ++   +++   + +RI R++     D
Sbjct: 377 RVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDRMHTMD 427



 Score = 25.8 bits (54), Expect = 0.39
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 233 RTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD 376
           R  R  R  ++DR  ++DR  R++    ++   + +R+ R++   R D
Sbjct: 374 RMNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRID 421



 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 242 RAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD 376
           R  R  ++DR  ++DR H ++    ++ T +   + R++   R D
Sbjct: 407 RIDRMDRMDRIDRIDRMHTMDTMDTMDRTDKMSSMDRMDRMDRVD 451



 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 230 DRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVE 358
           DRT +     ++DR  +VDR   ++ T K+    + +R+ RV+
Sbjct: 433 DRTDKMSSMDRMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVD 475



 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +2

Query: 224 KADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRR 370
           + +R  R  R  ++DR  ++DR  R++    ++   + +R+ R++   R
Sbjct: 374 RMNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDR 422



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = +2

Query: 242 RAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRAD 376
           R  +   +DR  ++DR  R++   + +     +R+ R++     D
Sbjct: 434 RTDKMSSMDRMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVDTMD 478


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
 Frame = -2

Query: 663 YQHYEG--HPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESP 514
           +QH+    HP H G   H   G   +       H HH    Q   HL    P
Sbjct: 319 HQHHPSQYHP-HRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQP 369


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -2

Query: 657 HYE--GHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESP 514
           HYE      H   L  P   R +   QS     HHQ+ +Q   +L  E+P
Sbjct: 45  HYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQQSPYLMYENP 94


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = -2

Query: 657 HYEGHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDR 538
           H++ H +H  +       +S  Q+Q  + H  H +  Q +
Sbjct: 169 HHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQ 208


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 538 AILMCQ-LMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLI 675
           A++ C  ++ TM    L  +HR T V  A    +  +    ++VC +
Sbjct: 520 AVISCLGIVATMAVACLLFHHRDTPVVRASGRELTIILLAGVLVCYL 566


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 538 AILMCQ-LMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLI 675
           A++ C  ++ TM    L  +HR T V  A    +  +    ++VC +
Sbjct: 610 AVISCLGIVATMAVACLLFHHRDTPVVRASGRELTIILLAGVLVCYL 656


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 151 NFNKTASEKLNSKDQPNYESMYQN 222
           N+N   +   N+    NY+ +Y+N
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 151 NFNKTASEKLNSKDQPNYESMYQN 222
           N+N   +   N+    NY+ +Y+N
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKLYKN 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,748
Number of Sequences: 438
Number of extensions: 4284
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)