Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7e18
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 34 0.022
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.62
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.9
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 1.9
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 2.5
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 2.5
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 27 3.3
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.4
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 26 4.4
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 4.4
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 5.8
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 25 7.7
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 216 VDFPLYTLQTLTNRHVIVAGGGGASNTGVANGFEI 320
+ FP Y+L + N + V GGGG + +GV N ++
Sbjct: 6 LSFPAYSLCWINNHQMAVGGGGGTTKSGVKNKLKL 40
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 29.1 bits (62), Expect = 0.62
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +3
Query: 405 SVRSIQNRTYLTAGQESHCQLYKVNIRMVDAAEMRRGSFRAENGLVRRRRRTVSENDNIS 584
S +N +YL S + K+N+R + +R +GL +R S +
Sbjct: 122 SEADFENCSYLFRTALSELRSEKINMRKDQISSLR-------SGLFSNQREVESLEQLVH 174
Query: 585 KKNNVSNTEKRMSFEIRPCDS 647
++ N NTE +M FE R D+
Sbjct: 175 EQLNKLNTESKMEFENRKNDT 195
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 367 ITSSATNLFPLCDSSNISNPFATPVFDAPPPPATMTCRF 251
I SSAT+ FP ++S +T + PPPA+ T F
Sbjct: 162 IYSSATSSFPYSTDVSVSTGTSTDIVTL-PPPASSTSSF 199
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 507 RRGSFRAENGLVRRRRRTVSENDNISKKNNVSNTEKRMSFE 629
R GS E V+RRR +SE + K S+ EK SFE
Sbjct: 22 RNGSIHGEITDVKRRR--LSERNGYGDKKGSSSKEKTSSFE 60
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 240 QTLTNRHVIVAGGGGASNTGV 302
+TLT RH+ + G GGA TGV
Sbjct: 81 RTLTARHIQMIGIGGAIGTGV 101
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 567 ENDNISKKNNVSNTEKRMSFEIRPCDSVQTDFSND 671
+++NI+ NN +NT KR +F + D +Q S+D
Sbjct: 729 DDNNINNNNNDNNTPKRKNFLM---DHIQRQLSHD 760
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 534 GLVRRRRRTVSENDNISKKNNV 599
G VRR VS ND ++KKN++
Sbjct: 456 GTVRRPPSLVSSNDELNKKNDI 477
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 570 NDNISKKNNVSNTEKRMSFEIRPCDSVQTDFSNDPL 677
N S NNV+ + SF+ +P + T SN+P+
Sbjct: 58 NGASSSNNNVAKSSSHDSFKAKPKNYDSTSNSNEPI 93
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 434 PHSGTREPLSAVQGEHPHGG 493
PHSG + L+ VQG+ +GG
Sbjct: 1157 PHSGVLKSLAVVQGDSVNGG 1176
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 601 VTQRKECHLKSDLVIVCRLTLVMIHC 678
V + K+ HLKS +V+ C L L+M++C
Sbjct: 1604 VFKSKKHHLKS-IVVKCTLQLLMLNC 1628
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 364 TSSATNLFPLCDSSNISNPFATPVFDAPPPPATMTC 257
T S ++ L D++N++ TP+ D P P ++ TC
Sbjct: 372 TGSESSAVSLSDTTNLN----TPISDIPSPGSSTTC 403
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 105 RPHESVCINYIIVNNSNMVKTTRIRQNLTKNR 10
+ S+CI + I + V+ +RQN++K+R
Sbjct: 44 KSRSSLCIEWTIDSLRQFVQQLSVRQNMSKDR 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,993
Number of Sequences: 5004
Number of extensions: 53699
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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