Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7e17
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 48 1e-06
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 46 4e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 44 2e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 3e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 40 4e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 40 4e-04
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 39 5e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.001
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 38 0.002
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.002
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 38 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 37 0.003
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 35 0.008
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 34 0.014
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.025
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.10
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 31 0.18
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 30 0.31
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.41
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.41
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.54
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 29 0.71
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.71
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 0.94
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.2
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 27 2.2
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 26 3.8
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ... 26 3.8
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 26 5.0
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 5.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 6.6
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 8.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.8
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 8.8
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi... 25 8.8
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 25 8.8
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 47.6 bits (108), Expect = 1e-06
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 201 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQEAIKKANGSVFKG 380
R++VG + T E++ D+F YG+I + FGFV+ + A++ + G F G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 381 KNIPVRAATDKRR 419
I V A +RR
Sbjct: 65 SRIVVEPARGERR 77
Score = 34.7 bits (76), Expect = 0.011
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 201 RIYVGALSDNTTVEELYDYFIQYGK---IDGIIVNRNFGFVQFAEESSAQEAIKKANGSV 371
R+ V LS++ + ++L D + G+ D N G V+F+ E + A+ NG V
Sbjct: 99 RLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEV 158
Query: 372 FKGKNIPVRAATDKRRDVETVTIYPEVP 455
KG+ + +R D + PEVP
Sbjct: 159 IKGQAVTLREDPDAANEP-----LPEVP 181
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 46.0 bits (104), Expect = 4e-06
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +3
Query: 204 IYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQEAIKKANGSVFKGK 383
+YV L +N T +EL YF+ +G+I VN N G + FA+ A++AI + N G
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLHGV 237
Query: 384 NI 389
I
Sbjct: 238 RI 239
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +3
Query: 204 IYVGALSDNTTVEELYDYFIQYGKIDGIIV-------NRNFGFVQFAEESSAQEAIKKAN 362
+Y+ L T +E D F Q+G+I + + R FGFV +A AQ+A+ + N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 363 GSVFKGKNIPVRAATDKRRDVE 428
+KGK + V A K E
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREE 344
Score = 34.7 bits (76), Expect = 0.011
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Frame = +3
Query: 204 IYVGALSDNTTVEELYDYFIQYGKI-------DGIIVNRNFGFVQFAEESSAQEAIKKAN 362
+++ L + L+D F +GKI D + + +GFV F SA AI+ N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 363 GSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGF 542
G + K + V +R V V +K+ E +E D +G +
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Query: 543 QEEFEEGNNRP 575
++ N++P
Sbjct: 290 LSLVKDQNDKP 300
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 39.9 bits (89), Expect = 3e-04
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Frame = +3
Query: 204 IYVGALSDNTTVEELYDYFIQYGKIDGI-------IVNRNFGFVQFAEESSAQEAIKKAN 362
++VG L+ + T LY+ FI +G+I + V+R++ FV+F E A+EA++ N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 363 GSVFKGKNIPVRAA 404
S+ + I V A
Sbjct: 68 YSILCDRCIRVSPA 81
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 39.5 bits (88), Expect = 4e-04
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Frame = +3
Query: 204 IYVGALSDNTTVEELYDYFIQYG-----KIDGIIVNRNFGFVQFAEESSAQEAIKKANGS 368
+++ LS T EE+YD F +YG ++ + R FV + A+ A +K +G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 369 VFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAY 509
F + + V +R V+ + P ++ + ++ ++E A+
Sbjct: 74 NFMDRYLVVHYYNPERAKVDGQDLAARFPLSINSVEENIQQKNESAH 120
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +3
Query: 171 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--NRNFGFVQFAEESSAQE 344
D+ + ++VG L+ N + ++L F +G+I I + + GFVQ++E+S+A++
Sbjct: 288 DLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEK 347
Query: 345 AIKKANGSV 371
AI G++
Sbjct: 348 AINTMQGAL 356
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 39.1 bits (87), Expect = 5e-04
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 192 AHLRIYVGALSDNTTVEELYDYFIQYGKIDGI--IVNRNFGFVQFAEESSAQEAI 350
A +Y +SD+ T EEL QYG+I+ I + NR+ GFV + S+A +A+
Sbjct: 498 ASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAV 552
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 186 STAHLRIYVGALSDNTTVEELYDYFIQYGKID--GIIVNRNFGFVQFAEESSAQEAIK 353
+ A +++G L + +E+ + F ++GKI+ I+ +N FV F A + ++
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVR 352
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +3
Query: 201 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRN-------FGFVQFAEESSAQEAIKKA 359
R+ V + N T E++ F +G I+ + + R+ FG++Q+ SA+ A++K
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 360 NGSVFKGKNIPVRAATDK 413
NG G+N+ V DK
Sbjct: 401 NGFDLAGRNMRVCLGNDK 418
Score = 32.7 bits (71), Expect = 0.044
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +3
Query: 204 IYVGALSDNTTVEELYDYFIQYGKI-DGIIV-------NRNFGFVQFAEESSAQEAI 350
++V L++ T ELYD+F Q G + D IV ++ +V+F E S Q AI
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +3
Query: 177 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI-DGIIV-------NRNFGFVQFAEES 332
+Q+ TA +++VG + + T EE ++F Q+G++ D ++ R FGFV + E
Sbjct: 242 EQEKTA--KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY-ENE 298
Query: 333 SAQEAIKKANGSVFKGKNIPVRAATDK 413
SA EA GK + V+ AT K
Sbjct: 299 SAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 34.7 bits (76), Expect = 0.011
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Frame = +3
Query: 201 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSAQEAIKK 356
++++G L+ TT + L DYF Q+G++ V +R FGF+ F E + K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 357 ANGSVFKGKNIPVRAATDKRRDVETVTIY 443
+ GK I + A + +T ++
Sbjct: 224 EHH--LDGKIIDPKRAIPREEQEKTAKMF 250
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Frame = +3
Query: 195 HLRIYVGALSDNTTVEELYDYFIQYGKI-------DGIIVNRNFGFVQFAEESSAQEAIK 353
H R++VG L ++ E LY F +Y + D R FGFV F + +A +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWR 88
Query: 354 KANGSVFKGKNIPVRAATD--KRRDVETVTI 440
+ NG + + + AT K +V TI
Sbjct: 89 EKNGKYIGSRPVKLSRATSDVKPNEVNEKTI 119
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 189 TAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--NRNFGFVQFAEESSAQEAIKKAN 362
TA+ ++VG LS + EEL F +G+I + + + GFVQF SA+ AI +
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 363 G 365
G
Sbjct: 360 G 360
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.003
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Frame = +3
Query: 240 EELYDYFIQYGKIDGIIVNRN-------FGFVQFAEESSAQEAIKKANGSVFKGKNIPV- 395
+ L +F ++GK+ I + F FV + +A+EA+ NG+ G+ I V
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181
Query: 396 --------RAAT--DKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQ 545
A T D + E + ++ +D + ESEE D + + +
Sbjct: 182 WAVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGKELAGE 241
Query: 546 EEFEEGNNRPEIHD 587
E EEG+N ++ D
Sbjct: 242 SE-EEGSNVDDVED 254
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 201 RIYVGALSDNT-TVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQEAIKKANGSVFK 377
R+++G L+ + + L+ F YG + I++ N+GFVQF A+ G+ +
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423
Query: 378 GKNI 389
G+ +
Sbjct: 424 GQKL 427
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 35.1 bits (77), Expect = 0.008
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 192 AHLRIYVGALSDNTTVEELYDYFIQYGKID--GIIVNRNFGFVQFAEESSAQEAIKK 356
A IY+G D+ T+E L + F ++G+I+ +N FV F +SA AI +
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDR 468
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +3
Query: 189 TAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI--IVNRNFGFVQFAEESSAQEAIKKAN 362
T + +Y+G + +TT+EE+ + ++ G + I + ++ FV F + SA + +N
Sbjct: 320 TGNRTVYIGNIHADTTIEEICN-AVRGGLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSN 378
Query: 363 --GSVFKGKNIPV 395
G V + + + +
Sbjct: 379 IHGLVIRNRRLKI 391
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.014
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = +3
Query: 204 IYVGALSDNTTVEELYDYFIQYGKIDGIIV-------NRNFGFVQFAEESSAQEAIKKAN 362
IYVG L T+ L D F G + + ++ FG VQF E+ A +I+K N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 363 GSVFKGKNIPVRAA 404
G + G+ + + A
Sbjct: 342 GYRYGGRPLQLSYA 355
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 33.5 bits (73), Expect = 0.025
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Frame = +3
Query: 153 LTLDRIDMKQKSTA---HLRIYVGALSD---NTTVEELYDYFIQYGKIDGIIVNRN---- 302
+ L+++ K K + + IYVG L ++ + EL++ F + K + +N
Sbjct: 2 IALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTD 61
Query: 303 ------FGFVQFAEESSAQEAIKKANGSVFKGKNIPV 395
F F+ F + SA AI NGS F+G + V
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKV 98
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.5 bits (68), Expect = 0.10
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 273 KIDGIIVNRNFGFVQFAEESSAQEAIKKANGSVFKGKNIPVR 398
K G ++ FGFV+F +++SA A+ NG V G + ++
Sbjct: 657 KRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIK 698
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 30.7 bits (66), Expect = 0.18
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +3
Query: 204 IYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESSAQEAIKKA 359
+YVG + + T EEL +F G ++ + + + F +++F+E S A+
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115
Query: 360 NGSVFKGKNIPVRAATDKRRDV 425
NGS+ + + V T KR +V
Sbjct: 116 NGSMLHERPLKV---TPKRTNV 134
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 29.9 bits (64), Expect = 0.31
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Frame = +3
Query: 129 K*ITMADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELY--DYFIQYGKIDGIIVNRN 302
K + +++ L I + QK+ A++ +++ + L +YF QYGKI I +N+
Sbjct: 97 KEVELSNRKHLANIRVVQKNLAYVNGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKK 156
Query: 303 FG----------FVQFAEESSAQEAIKKANGSVFKGKNIPVRAATDK 413
++ + + A AI +GSV G+++ T K
Sbjct: 157 AAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASYGTTK 203
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.5 bits (63), Expect = 0.41
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 20/86 (23%)
Frame = +3
Query: 204 IYVGALSDNTTVEELYDYFIQYGKIDGIIVN-----------------RN---FGFVQFA 323
IYVG + + EE+ +F +YG+++ I +N +GFV+F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 324 EESSAQEAIKKANGSVFKGKNIPVRA 401
S +E +K A G + + ++A
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKA 104
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.5 bits (63), Expect = 0.41
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 237 VEELYDYFIQYGKIDGIIVN-RNFGFVQFAEESSAQEAIKKANGSVFKGKNIPVRAAT-- 407
V L Y I+ K+ G R FGFV FA AI++ NG + V++A
Sbjct: 237 VRSLPPYIIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR 296
Query: 408 -DKRRD 422
DK+ D
Sbjct: 297 EDKQND 302
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.54
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +3
Query: 219 LSDNTTVEELYDYFIQYGKIDGIIVNRN--------FGFVQFAEESSAQEAIKKANGSVF 374
LSD+T EEL D F ++G I + + ++ F FV + + A +A + +G +
Sbjct: 209 LSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG--Y 266
Query: 375 KGKNIPVRAATDKRRD 422
N+ +R K RD
Sbjct: 267 GWNNLILRCEFSKPRD 282
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 28.7 bits (61), Expect = 0.71
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 366 SVFKGKNIPVRAATDKRRDVETVTIYPEVP-----PAVALKDTQMEDESEEAYDNYGNNN 530
S FK ++ P +AA ++ ++ + EVP P V +K+ + + E++ D + NN
Sbjct: 652 SRFKARS-PSKAARVLKKPLKKRVRFSEVPTTSSVPPVEIKNKDSKPKVEKSLDKHNMNN 710
Query: 531 DHGFQEEFEEGNN 569
D F + N
Sbjct: 711 DRSFLVPSRDARN 723
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 28.7 bits (61), Expect = 0.71
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Frame = +3
Query: 162 DRIDMKQKSTAHLR-IYVGALSDNTTVEELYDYFIQYGKIDG--IIVN------RNFGFV 314
D +ST+ R +Y+ L NT+ E L Y ++GK+ I++ + +GF
Sbjct: 283 DNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFA 342
Query: 315 QFAEESSA 338
F EE SA
Sbjct: 343 CFEEEKSA 350
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 0.94
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +3
Query: 180 QKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV--------NRNFGFVQFAEESS 335
Q S ++VG LS N + L F +YG I G V ++ +G+V F +
Sbjct: 257 QDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEA 316
Query: 336 AQEAIKKANGS 368
A+ A+ ANG+
Sbjct: 317 AKAAV-AANGT 326
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 422 ISSFISCGSDRDIFSFEYATISFFYC 345
IS FI G DIF++EY F +C
Sbjct: 50 ISPFIGDGRGSDIFNYEYYDERFHFC 75
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 474 DTQMEDESEEAYDNYGNNNDHGFQEEFEEGNNRPEI 581
D + ES E YD YG N+D Q F+ G N ++
Sbjct: 58 DILKDPESREMYDMYGMNSDSNSQ--FDGGVNLDDV 91
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/100 (20%), Positives = 39/100 (39%)
Frame = +3
Query: 294 NRNFGFVQFAEESSAQEAIKKANGSVFKGKNIPVRAATDKRRDVETVTIYPEVPPAVALK 473
N F F + + ++ + S F+ + + AT R +E + + P + +K
Sbjct: 347 NEIFNFNSDSLQQQFRQGEEIVKQSFFQVPDYNILVATLLREGIENLKDNMSIRPGIPVK 406
Query: 474 DTQMEDESEEAYDNYGNNNDHGFQEEFEEGNNRPEIHDER 593
+ ++ DH F EF+ R +IH +R
Sbjct: 407 P-MLGSITKNLQHMLERLTDHNFSCEFKYDGQRAQIHCDR 445
>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
Arc34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 417 RDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFEEGNNRPEI 581
RD ET+ ++PE + T+ +E++ + F +EF + RP I
Sbjct: 162 RDEETIVLWPEHDRVTVVFSTKFREETDRIFGKV-------FLQEFVDARRRPAI 209
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 381 KNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFEE 560
K + +AT ++R + + + + +D + ++ SE A+ N D G +EE E+
Sbjct: 118 KTLGAASATGRKRARRKLDMKTFIDFTIKAQDLK-DESSEAAHPNIEEEPDEGLEEEDED 176
Query: 561 -GNNRPEIHDERGRGRGRG 614
G++ + E G G
Sbjct: 177 FGDDDDNDYGENYFDNGEG 195
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 522 NNNDHGFQEEFEEGNNRPEIHDERGRGRGRG 614
+N + QEE E GN+ +D G+G+G
Sbjct: 418 SNGNKSEQEEKENGNDETRSNDSLVSGKGKG 448
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 6.6
Identities = 31/120 (25%), Positives = 52/120 (43%)
Frame = +3
Query: 201 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNRNFGFVQFAEESSAQEAIKKANGSVFKG 380
R+ ++ D+ EEL+D F G D + + + +VQ ++ S++Q I A S
Sbjct: 563 RLSSESIKDSQKTEELHDSF---GINDEVDQSTSL-YVQNSQPSASQLTIVDATYS---- 614
Query: 381 KNIPVRAATDKRRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEEFEE 560
P R + R D +T T + +L TQ++ D+ N D +E EE
Sbjct: 615 -QPPPRWESSSRDD-KTNTSSTQPSQVDSLVPTQLDSTIPTQIDSVQRNKDQDDEEILEE 672
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 486 EDESEEAYDNYGNNNDHGFQEEFEEGNN 569
E +S E +D+Y N N + E EEG +
Sbjct: 16 ERQSSEGHDDYLNRNPNSEATEGEEGTH 43
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 513 NYGNNNDHGFQEEFEEGNNRPEIHDERGRGRGRG 614
NY NN ++ + ++FE+ N ++ G+ +G
Sbjct: 2854 NYSNNIENPYTKDFEDSNLAYVLYTSGSTGKPKG 2887
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -3
Query: 412 LSVAALTGIFFPLNTLPLAFFIASCALDSSA----NCTNPKFLLTIIPSIFP 269
L +AA G+ +N P F+ASC D + + +N K L I ++ P
Sbjct: 215 LKLAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKKKSLITINNVSP 266
>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
L34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Frame = +3
Query: 414 RRDVETVTIYPEVPPAVALKDTQMEDESEEAYDN-YGNNN-----DHGFQEEFEEGNNRP 575
R T T+Y +P QM+ + Y N Y +N HGF N R
Sbjct: 36 RNPFNTATLYSSLPTMNIFG--QMQQVRWKTYGNEYQPSNRKRKRKHGFLSRIRSVNGRR 93
Query: 576 EIHDERGRGR 605
+ D R +GR
Sbjct: 94 VLRDRRQKGR 103
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 126 YNCIFVNL*ANSDFFAVTKILFNVNIKCTYVHVCLYLAV*RV 1
+NC F++ A A+T+ +F++ + Y H+ L V RV
Sbjct: 177 WNCKFISKSAVQGLEAITEAIFSIEGEGAYGHLMLEGGVHRV 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,865
Number of Sequences: 5004
Number of extensions: 51871
Number of successful extensions: 231
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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