Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7e14
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.4  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   4.2  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    25   5.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   5.5  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   7.3  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   7.3  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   9.6  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 163 EKMLRNLNYLRHCFRVSGIRFKSSNVEINENEPVKFSTSRAASRGPVPLISKINDDMPWY 342
           E + +N  +  + +R S      +N   N+    +   SRA SR P   IS+ +D  P Y
Sbjct: 180 ESLHKNHKHYENSYRPSR---SQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPY 236

Query: 343 QPY 351
             Y
Sbjct: 237 HSY 239


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 244 INENEPVKFSTSRAASRGPVPLISKINDD 330
           INENEP  F+     SR    + SK+ DD
Sbjct: 212 INENEPYNFTHYLLLSRTYTEIESKLMDD 240


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 385 YFCVLREESDIDREFDKTLYDRIKGLEKE 471
           Y CV++   D+  +FD+ + +++  L K+
Sbjct: 57  YVCVIKTHIDVVEDFDQDMVEKLVALGKK 85


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 334 PWYQPYVVIGSVAIFMLYFCV-LREESDIDREFDKTLYDRIKGLEKEQL 477
           P+ Q +V I       +YF V LR    I   FD    ++I GLE+  L
Sbjct: 312 PFGQTFVEIEDPFCSFVYFYVSLRVPCSIQLFFDSVPLEKINGLEQRAL 360


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/55 (21%), Positives = 23/55 (41%)
 Frame = +1

Query: 223 FKSSNVEINENEPVKFSTSRAASRGPVPLISKINDDMPWYQPYVVIGSVAIFMLY 387
           F SSN   +  +     T+ + +  P P   +   +  +Y PY  +G   ++  Y
Sbjct: 404 FTSSNATYSGEQKTYSPTTLSTNAPPSPSSGRSCSNCNYYYPYTPVGYYPVYNRY 458


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 331 MPWYQPYVVIGSVAIFMLYFCVLREESDIDREFDK 435
           +PW + Y+ +   A+++    VL E+  +DR+ +K
Sbjct: 88  IPWKRAYLYVKRPALYIPGETVLVEQVYVDRQLEK 122


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 517 HFYHVLCCICMIGGVVLFLSLLSYH 443
           +F+    CIC++G +  +L LL YH
Sbjct: 445 YFFIGPICICLLGSISSYL-LLGYH 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,321
Number of Sequences: 5004
Number of extensions: 38155
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)