Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7e14
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-5|AAA82425.1|  153|Caenorhabditis elegans Hypothetical pr...    32   0.31 
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr...    31   0.72 
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC087735-1|AAK31560.2|   98|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U41264-5|AAA82425.1|  153|Caenorhabditis elegans Hypothetical
           protein F10E7.6 protein.
          Length = 153

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 358 IGSVAIFMLYFCVLREESDIDREFDKTLYDRIKGLEKEQLLQSYRYNKEHGKSVIEIEER 537
           IGS+   ++YF  LRE SD+D  +    +     LE++ L +  +  +E G     +  +
Sbjct: 65  IGSLIAIVIYFGWLREPSDLDEIWSAPPHILTSNLERKMLREQIKQAQEKGMDTALLRAQ 124

Query: 538 L 540
           L
Sbjct: 125 L 125


>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
           protein F59A3.1 protein.
          Length = 1014

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 205 RVSGI-RFKSSNVEINENEPVKFSTSRAASRGPVPLISKINDDMPWYQPY 351
           R+S + R  +++V++N N P KF + R  S G  P    I   M W Q Y
Sbjct: 194 RISAMGRANANDVDLNRNFPTKFESHRETSGGSEPEKENI-AVMKWLQAY 242


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -2

Query: 111 TIHSIESRL*VLHLTKLFYKLISFSVNLSNSKQLHN 4
           TI++++  +  +   K FYKL+  SV++  + ++H+
Sbjct: 165 TINTLKMAIATMEKLKPFYKLVEISVHVKKAAEMHD 200


>AC087735-1|AAK31560.2|   98|Caenorhabditis elegans Hypothetical
           protein Y35H6.3 protein.
          Length = 98

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +1

Query: 241 EINENEPVKFSTSRAASRGPVPLISKI---NDDMPWYQPYV 354
           E+N  +P   S  RAA  GPV   S     ND    + PYV
Sbjct: 52  ELNSTKPTPKSRKRAAQGGPVDTFSPFHFKNDITSSFLPYV 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,170,009
Number of Sequences: 27780
Number of extensions: 211438
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)