Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7e13
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    45   9e-06
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    30   0.36 
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   4.5  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   4.5  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   4.5  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   7.9  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   7.9  

>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 5/214 (2%)
 Frame = +3

Query: 66  EIPIIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNF 245
           E+P IDL+   T +         + ++L  A    G   L NHGI  +++   +   D F
Sbjct: 5   EVPCIDLSENDTSI---------VVKELLDACKNWGFVSLKNHGIPLDEIDRTFKLADKF 55

Query: 246 CALPEGCQAQYLRNPVSNH----GYVRPGMDQFDNTKTELRHSFNITTLNAASMP-AQEE 410
             +P   + +YL      H    G+    +D    ++ +L+ S+++       +      
Sbjct: 56  FDIPVEEKQKYLFKGGRLHSGYTGHFGEKLDMEHQSRGDLKESYDLAGFPDPKLENLCPF 115

Query: 411 VPEFTKHAVPLAQDLTKLSRVLLQALAYALGVPPGTFLDCHSGMMQGDGRNPSIMRLLYY 590
           + E     +   +   KL+  LL   A   G+PP  F   HS           ++RLL Y
Sbjct: 116 IAEHMDEFLQFQRHCYKLTLRLLDFFAIGFGIPPDFFSKSHSS-------EEDVLRLLKY 168

Query: 591 PPVPPEDEGPCCQSDVVHYTRCGAHADYGTFTLI 692
             +P   EG   + D       GAH+DYG+ TL+
Sbjct: 169 -SIP---EGVERRED---DEDAGAHSDYGSITLL 195


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = +3

Query: 75  IIDLAHIGTDVCPMKSVVRRIGQQLFTALSTKGLAVLVNHGIADEKLKSVYGDLDNFCAL 254
           I+ L   G  V        RI QQL  A  + G   +VN  I+ + +K+ +     F  L
Sbjct: 24  IMPLIDFGPYVNQEPGAHERIIQQLRAACESTGFFQIVNSPISPDVVKNAFRASKQFFEL 83

Query: 255 PEGCQAQYLRNPVSNHGY 308
           P   +    ++  SN GY
Sbjct: 84  PFDEKLTLSKDMFSNRGY 101


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 195 GIADEKLKSVYGDLDNFCALPEGCQAQYLRNPVSNHGYVRPGMDQFDNTKTELRHSFNIT 374
           G++ +++++ Y    N  A P+     Y    V  +  +R  ++  DN K + R  FN++
Sbjct: 388 GLSPDEVENFYNKSKNSLANPDYDPKIYGLQSVLWYSKLRKLIEMMDNIKNKDRSIFNLS 447

Query: 375 T 377
           T
Sbjct: 448 T 448


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 14  AGDYNGGQAGGNSALPLRDSHHRPSA 91
           +G+ + G   GN +LPL +  H+P +
Sbjct: 130 SGESDHGSNAGNESLPLLEEDHKPES 155


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 123 VVRRIGQQLFTALSTKGLAVLVNH 194
           + +R GQ LFTA + KG+  ++ H
Sbjct: 131 LTKREGQPLFTACTPKGIMCILKH 154


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +1

Query: 274  NIFVTLSATMAMFVLAWTSSTILKRSCVIRSTSRP*MPHRCRHKRKFPNLRSTPYLLP 447
            +I  T ++ +  F   +    I+    V    SRP   HR  HKR   NL S   L P
Sbjct: 1086 SILYTTNSNLGDFQFLFIDLVIILPIAVFMGRSRP--YHRLAHKRPTANLVSKRILSP 1141


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 440 SCPRPDETVARATASSRLCSRSTSRHLLG 526
           +C +  +TVA  + SSRL      RH+ G
Sbjct: 201 NCKKVGDTVASLSLSSRLSKADKIRHIYG 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,946
Number of Sequences: 5004
Number of extensions: 63549
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)