Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7e13
         (693 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot...    32   1.7  
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.           32   1.7  
BC080554-1|AAH80554.1|  659|Homo sapiens splicing factor, argini...    30   6.8  
AY358944-1|AAQ89303.1|  594|Homo sapiens SWAP2 protein.                30   6.8  
AK092772-1|BAC03972.1|  562|Homo sapiens protein ( Homo sapiens ...    30   6.8  
AF042810-1|AAC82340.1|  659|Homo sapiens suppressor of white-apr...    30   6.8  
AF042800-1|AAC82339.1|  659|Homo sapiens suppressor of white apr...    30   6.8  
M11124-1|AAA59754.1|  232|Homo sapiens HLA-DQA1 protein.               30   9.0  

>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
           protein.
          Length = 3144

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 374 DPECRIDAGTRGSSRIYEARRTSCPRPDETVARATASSRLCSRSTSRHLLGLSLG 538
           DP   ++ GT+ SS I ++ +T+   PD  V   + SS +    T    LGL +G
Sbjct: 545 DPAMDLNDGTQASSPISDSSQTTTEGPDSAVT-PSDSSEIVLDGTDNQYLGLQIG 598


>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
          Length = 3144

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 374 DPECRIDAGTRGSSRIYEARRTSCPRPDETVARATASSRLCSRSTSRHLLGLSLG 538
           DP   ++ GT+ SS I ++ +T+   PD  V   + SS +    T    LGL +G
Sbjct: 545 DPAMDLNDGTQASSPISDSSQTTTEGPDSAVT-PSDSSEIVLDGTDNQYLGLQIG 598


>BC080554-1|AAH80554.1|  659|Homo sapiens splicing factor,
           arginine/serine-rich 16 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 26/70 (37%), Positives = 30/70 (42%)
 Frame = +2

Query: 350 AASFVQHHDPECRIDAGTRGSSRIYEARRTSCPRPDETVARATASSRLCSRSTSRHLLGL 529
           AAS V    P      G     R   ARR S      + A  T+SSR  SRS+SR   G 
Sbjct: 332 AASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGG 391

Query: 530 SLGYDAGRWA 559
              Y +GR A
Sbjct: 392 GY-YRSGRHA 400


>AY358944-1|AAQ89303.1|  594|Homo sapiens SWAP2 protein.
          Length = 594

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 26/70 (37%), Positives = 30/70 (42%)
 Frame = +2

Query: 350 AASFVQHHDPECRIDAGTRGSSRIYEARRTSCPRPDETVARATASSRLCSRSTSRHLLGL 529
           AAS V    P      G     R   ARR S      + A  T+SSR  SRS+SR   G 
Sbjct: 347 AASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGG 406

Query: 530 SLGYDAGRWA 559
              Y +GR A
Sbjct: 407 GY-YRSGRHA 415


>AK092772-1|BAC03972.1|  562|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35453 fis, clone SMINT2004414. ).
          Length = 562

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -3

Query: 562 LRPSPCIIPE*QSKKVPGGTPRA*ARACSSTRDSFVRSWARGTACFVNSGTSS--CAGID 389
           L+  PC+ PE + +   G  PR     CS    +F R W+      V+S      C    
Sbjct: 245 LKAHPCLRPEGEQEGEGGPPPRPKRHQCSICLKAFARPWSLSRHRLVHSTDRPFVCPDCG 304

Query: 388 AAFRV 374
            AFR+
Sbjct: 305 LAFRL 309


>AF042810-1|AAC82340.1|  659|Homo sapiens suppressor of
           white-apricot homolog 2 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 26/70 (37%), Positives = 30/70 (42%)
 Frame = +2

Query: 350 AASFVQHHDPECRIDAGTRGSSRIYEARRTSCPRPDETVARATASSRLCSRSTSRHLLGL 529
           AAS V    P      G     R   ARR S      + A  T+SSR  SRS+SR   G 
Sbjct: 332 AASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGG 391

Query: 530 SLGYDAGRWA 559
              Y +GR A
Sbjct: 392 GY-YRSGRHA 400


>AF042800-1|AAC82339.1|  659|Homo sapiens suppressor of white
           apricot homolog 2 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 26/70 (37%), Positives = 30/70 (42%)
 Frame = +2

Query: 350 AASFVQHHDPECRIDAGTRGSSRIYEARRTSCPRPDETVARATASSRLCSRSTSRHLLGL 529
           AAS V    P      G     R   ARR S      + A  T+SSR  SRS+SR   G 
Sbjct: 332 AASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGG 391

Query: 530 SLGYDAGRWA 559
              Y +GR A
Sbjct: 392 GY-YRSGRHA 400


>M11124-1|AAA59754.1|  232|Homo sapiens HLA-DQA1 protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 351 LRHSFNITTLNAASMPAQEEVPE---FTKHAVPLAQDLTKLSRV 473
           L+H+ NI    + S PA  EVPE   F+K  V L Q  T +  V
Sbjct: 69  LKHNLNIVIKRSNSTPATNEVPEVTVFSKSPVTLGQPNTLICLV 112


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,728,433
Number of Sequences: 237096
Number of extensions: 2603921
Number of successful extensions: 11937
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11936
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)