Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7e13
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC017117-5|AAF16616.1| 154|Caenorhabditis elegans Hypothetical ... 29 2.4
Z83129-6|CAB63324.1| 101|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 29 4.2
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 29 4.2
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 29 4.2
U64598-5|AAK39217.3| 638|Caenorhabditis elegans Mechanosensory ... 28 7.3
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 28 7.3
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 28 7.3
U41278-7|AAT81193.1| 680|Caenorhabditis elegans Hypothetical pr... 27 9.6
U41278-6|AAK31510.3| 771|Caenorhabditis elegans Hypothetical pr... 27 9.6
>AC017117-5|AAF16616.1| 154|Caenorhabditis elegans Hypothetical
protein F43C11.5 protein.
Length = 154
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/92 (26%), Positives = 41/92 (44%)
Frame = +1
Query: 172 DSLYLSTTALPMKS*NQSMETSTISVHFPRAVKRNIFVTLSATMAMFVLAWTSSTILKRS 351
D Y+ +T P S Q+ E ST+ V A + T + M A SST+ ++
Sbjct: 7 DEAYIPSTLAPKMS-TQAPEESTMGVDTTMAGDK----TTEEVIEMTTPAMESSTMTEKE 61
Query: 352 CVIRSTSRP*MPHRCRHKRKFPNLRSTPYLLP 447
C + + P + + + KF ++ T +LP
Sbjct: 62 CPVSAAKCPDLATVVKVRTKFFSIFITDSILP 93
>Z83129-6|CAB63324.1| 101|Caenorhabditis elegans Hypothetical
protein W06G6.10 protein.
Length = 101
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = +3
Query: 354 RHSFNITTLNAASMPAQEEVPEFTKHAVPLAQDLTKLSRVLLQALAYALGVPPGTFLDCH 533
R+ ++T+ + ++V E HA+P D+T Y + V P +F D
Sbjct: 5 RNPLSMTSTKPTLLNVLDDVGEAALHAIPKVDDITSHK-------IYVIAVQPVSFSDIE 57
Query: 534 SGMMQGDGRNPS 569
S ++ D +P+
Sbjct: 58 SQAVKQDASSPN 69
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 178 LYLSTTALPMKS*NQSMETSTISVHFPRAVKRNIFVTLSA-TMAMFVLAWTSSTIL 342
++ T L M N S E + SV PR + +F+TL M F++A TSS L
Sbjct: 211 IFSGVTGL-MAGANMSGELARPSVSIPRGTVQAVFMTLFVYVMTAFLMATTSSRYL 265
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 178 LYLSTTALPMKS*NQSMETSTISVHFPRAVKRNIFVTLSA-TMAMFVLAWTSSTIL 342
++ T L M N S E + SV PR + +F+TL M F++A TSS L
Sbjct: 314 IFSGVTGL-MAGANMSGELARPSVSIPRGTVQAVFMTLFVYVMTAFLMATTSSRYL 368
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 178 LYLSTTALPMKS*NQSMETSTISVHFPRAVKRNIFVTLSA-TMAMFVLAWTSSTIL 342
++ T L M N S E + SV PR + +F+TL M F++A TSS L
Sbjct: 327 IFSGVTGL-MAGANMSGELARPSVSIPRGTVQAVFMTLFVYVMTAFLMATTSSRYL 381
>U64598-5|AAK39217.3| 638|Caenorhabditis elegans Mechanosensory
abnormality protein18 protein.
Length = 638
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -2
Query: 602 WDRRVVQQTHDRRITPIALHHTR---VTVQEG-AWRYSE 498
WD+ Q HD + I+ H + V V G WRYSE
Sbjct: 11 WDKTAAQSFHDYFFSKISAHGSNLAIVDVDSGKQWRYSE 49
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = -1
Query: 624 SKDPRLQVGQAGSTTDA*SKDYAHRPASYPSDSPRRCLEVLREHKRELAVARATVSSGLG 445
S+ PR + ++ + S+ + +P+S S SPRR E R+ R+ + +R+ + L
Sbjct: 174 SRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAERLR 233
Query: 444 QEVRRAS*IRELP 406
++ R RE P
Sbjct: 234 RKSRSPRRSREEP 246
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = -1
Query: 624 SKDPRLQVGQAGSTTDA*SKDYAHRPASYPSDSPRRCLEVLREHKRELAVARATVSSGLG 445
S+ PR + ++ + S+ + +P+S S SPRR E R+ R+ + +R+ + L
Sbjct: 174 SRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSREDPRKVARKPSRSRSRSAERLR 233
Query: 444 QEVRRAS*IRELP 406
++ R RE P
Sbjct: 234 RKSRSPRRSREEP 246
>U41278-7|AAT81193.1| 680|Caenorhabditis elegans Hypothetical
protein F33G12.6b protein.
Length = 680
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -1
Query: 675 RNRHERHSVCNVPHHFGSKDPRLQVGQAGSTTDA*SKDYAHRPASYPSDSPRRCLEVLRE 496
++ HE ++P +D L V G D S+ +RP + + P C++ +
Sbjct: 398 KSEHENKENAHLPPR---EDRTLDVTTRGGEKDKHSEYARNRPCA--ASLP--CVDAAKR 450
Query: 495 HKRELAVARATVSSGLGQEVRR--AS*IRELPLVPASMRH 382
H+ L R +++G G E R AS + P+ +++ H
Sbjct: 451 HELMLVRMRDVIANGFGNETPRGPASDYQYPPVTASTLCH 490
>U41278-6|AAK31510.3| 771|Caenorhabditis elegans Hypothetical
protein F33G12.6a protein.
Length = 771
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -1
Query: 675 RNRHERHSVCNVPHHFGSKDPRLQVGQAGSTTDA*SKDYAHRPASYPSDSPRRCLEVLRE 496
++ HE ++P +D L V G D S+ +RP + + P C++ +
Sbjct: 398 KSEHENKENAHLPPR---EDRTLDVTTRGGEKDKHSEYARNRPCA--ASLP--CVDAAKR 450
Query: 495 HKRELAVARATVSSGLGQEVRR--AS*IRELPLVPASMRH 382
H+ L R +++G G E R AS + P+ +++ H
Sbjct: 451 HELMLVRMRDVIANGFGNETPRGPASDYQYPPVTASTLCH 490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,232,682
Number of Sequences: 27780
Number of extensions: 390838
Number of successful extensions: 1108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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