Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7e13
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.90 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.90 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 290 CQQPWLCSSWHGPVRQY*NGAASFVQHHDPECRIDAGTRGSSRI 421
           C  PW+ +  H   RQ       ++  H+PE   DA +  + +I
Sbjct: 330 CIDPWIYAINHPRYRQELQKRCKWMGIHEPETTSDATSAQTEKI 373


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 290 CQQPWLCSSWHGPVRQY*NGAASFVQHHDPECRIDAGTRGSSRI 421
           C  PW+ +  H   RQ       ++  H+PE   DA +  + +I
Sbjct: 330 CIDPWIYAINHPRYRQELQKRCKWMGIHEPETTSDATSAQTEKI 373


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 186 VNHGIADEKLKSVYGDLDNFCALPEG-CQAQYLRN 287
           +NH + +E  +S YGD  N C +  G   A+ L N
Sbjct: 449 LNHMMREEFYQSQYGDPINNCEIKAGEIDAERLNN 483


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 288 PVSNHGYVRPGMDQFDNTKTELRHSFNITTLNAASMPAQEEVPEFT 425
           PVS +GYV+P        + EL H   +   N    P++E++   T
Sbjct: 321 PVSPYGYVKP----ISPEQEELIHRL-VYFQNEYEQPSEEDLKRIT 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,617
Number of Sequences: 438
Number of extensions: 4731
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)