Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7e02
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 199 2e-52
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 103 2e-23
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 103 3e-23
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 101 6e-23
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 101 6e-23
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 93 3e-20
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 93 3e-20
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 90 2e-19
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 90 2e-19
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 82 7e-17
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 74 2e-14
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 69 5e-13
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 66 5e-12
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 48 8e-07
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 28 1.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.8
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 3.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.4
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 25 6.4
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 8.5
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 199 bits (486), Expect = 2e-52
Identities = 87/98 (88%), Positives = 91/98 (92%)
Frame = +3
Query: 306 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 485
MALKRINREL DLG+DPP+ CSAGP G+DLFHWQATIMGP DSPY GGVFFL+IHFPTDY
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 486 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALT 599
PFKPPKV FTTRIYHPNINSNGSICLDILR QWSPALT
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALT 98
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 103 bits (248), Expect = 2e-23
Identities = 42/97 (43%), Positives = 64/97 (65%)
Frame = +3
Query: 300 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 479
S A +R+ R+ + + +DPPA SA P +++ W A I+GP D+P++ G F L + F
Sbjct: 2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDE 61
Query: 480 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSP 590
YP KPP V F + ++HPN+ +NG +CLDIL+ +WSP
Sbjct: 62 QYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSP 98
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 103 bits (246), Expect = 3e-23
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = +3
Query: 315 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 494
+RI +EL D+ +D A +D+ H + GP +PY+GG F + I P DYPF+
Sbjct: 7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66
Query: 495 PPKVAFTTRIYHPNINS-NGSICLDILRAQWSPALT 599
PPK+ F T+IYHPN++S G+ICLDIL+ QWSP T
Sbjct: 67 PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYT 102
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 101 bits (243), Expect = 6e-23
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = +3
Query: 306 MAL-KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 482
MAL KRI +E++ L RDPP A P ++L +++ T+ GP S Y+GG F L + P +
Sbjct: 1 MALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 483 YPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPAL 596
YP PP V F T+IYHPN++ G ICL L+ WSPAL
Sbjct: 61 YPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPAL 98
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 101 bits (243), Expect = 6e-23
Identities = 43/94 (45%), Positives = 58/94 (61%)
Frame = +3
Query: 300 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 479
S + +R+ +E DL P ++LFHW T +GP DS Y GG F ++ FP
Sbjct: 5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPL 64
Query: 480 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ 581
DYPF+PP + FTTRIYHPN +S G++CL IL+ Q
Sbjct: 65 DYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQ 98
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 93.1 bits (221), Expect = 3e-20
Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +3
Query: 321 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 497
+ ++L+++ ++PP S G + +F W+ I+GP D+ Y+GG F T+ FP DYP P
Sbjct: 10 LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMP 69
Query: 498 PKVAFTTRIYHPNINSNGSICLDIL 572
PK+ FTT I+HPN++ NG +C+ IL
Sbjct: 70 PKMKFTTEIWHPNVHPNGEVCISIL 94
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 93.1 bits (221), Expect = 3e-20
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = +3
Query: 390 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLD 566
D+FHW+A I GP ++PY+GG + L IH YP PP V F T+I HPNI+ +NG +C+D
Sbjct: 33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMD 92
Query: 567 ILRAQWSPA 593
IL+ WSPA
Sbjct: 93 ILKTHWSPA 101
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 90.2 bits (214), Expect = 2e-19
Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 315 KRINRELQDLGRDPPAQCSAGPHGE-DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPF 491
KR+ EL L SA P + +L HW TI GP D+ Y+G F +++ FP +YP+
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 492 KPPKVAFTTRIYHPNINSNGSICLDILRAQWS 587
PP + FT+ ++HPN++ +G+ICLDIL+ +WS
Sbjct: 91 SPPTIIFTSPMWHPNVDMSGNICLDILKDKWS 122
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 90.2 bits (214), Expect = 2e-19
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +3
Query: 306 MALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTD 482
MAL+R+ +E ++L + P +AGP ED F W I GP +P++GG++ T+ FP+D
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSD 64
Query: 483 YPFKPPKVAFTTRIYHPNINSNGSICLDILRA 578
YP PP + F +HPN+ +G++C+ IL A
Sbjct: 65 YPLGPPTLKFECEFFHPNVYKDGTVCISILHA 96
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 81.8 bits (193), Expect = 7e-17
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Frame = +3
Query: 300 SQMALKRINRELQDLGRDPP-----AQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLT 464
S + R+ E + RD P C + G DL +W+ I G + ++GG++ LT
Sbjct: 2 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 61
Query: 465 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ--WSPALT 599
+ FP +YP +PPK FT ++HPN+ +G++CL IL + W PA+T
Sbjct: 62 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAIT 108
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 73.7 bits (173), Expect = 2e-14
Identities = 26/58 (44%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = +3
Query: 420 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRAQWSP 590
GP ++PY GG++ + + P++YP+K P + F RI+HPNI+ +GS+CLD++ WSP
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSP 95
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 68.9 bits (161), Expect = 5e-13
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 300 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 479
S+ A KR+ +E L ++P A P E++ W I GP D+PY+GG + T+ FP
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 480 DYPFKPPKVAFTTRIYHPNINSNGSICL---DILRAQWSPA 593
DYPFKPP + T +N +CL D W+P+
Sbjct: 63 DYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPS 101
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 65.7 bits (153), Expect = 5e-12
Identities = 27/58 (46%), Positives = 36/58 (62%)
Frame = +3
Query: 423 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPAL 596
P + Y+GG F I +YP PPKV +IYHPNI+ G++CL+ILR W+P L
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVL 117
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 48.4 bits (110), Expect = 8e-07
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 360 AQCSAGPHGED---LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 530
+ CS G D L W ATI+GP S ++ ++ L IH +YP PP V F +RI
Sbjct: 24 SSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINL 83
Query: 531 PNIN 542
P ++
Sbjct: 84 PGVD 87
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 297 NSQMALKRINRELQDLGRDPPAQCSAG---PHGEDLFHWQATIMGPVDSPYQGGVF 455
+S A K I+ + Q+ + A AG P G + W AT M P+ +P GG F
Sbjct: 246 SSSAAAKNISEDAQNRMTNATASIMAGSALPSGGKKYSWMATDMTPM-TPAVGGGF 300
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +1
Query: 361 HNVRQAHTVKIC---SIGKPQLWAQLTVLIKEEFSSLPYISLQTTLSNHQ 501
H V +T C ++ P LWA L + F Y L+T N+Q
Sbjct: 406 HTVFSGYTTVWCPQNAVFVPGLWANLATRYRASFMLTDYAGLKTIAYNYQ 455
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 477 TDYPFKPPKVAFTTRIYHPNINSN 548
TD FKP + T +++P+I +N
Sbjct: 113 TDKKFKPNDTSITANVFNPSIQNN 136
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +2
Query: 185 DFGGTFAFRQGAILQSLIKGPWL 253
D G+ +FR+G ++++L G W+
Sbjct: 943 DDNGSLSFREGVLVEALRNGYWI 965
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +3
Query: 375 GPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 527
G HG LF M P PY+G T H + ++ + TT Y
Sbjct: 146 GYHGNTLFALSVGGMKPRKQPYEGVFSHTTSHVSPCFEYRYKENGETTEEY 196
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 384 RVGLPNIVLVDPCPDL 337
RV L +IV ++PCPD+
Sbjct: 113 RVRLGDIVTINPCPDI 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,403
Number of Sequences: 5004
Number of extensions: 55541
Number of successful extensions: 145
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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