Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7d24
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0369 + 7843364-7843631,7844994-7845053,7845659-7845741,784... 85 3e-17
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 37 0.009
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386... 36 0.021
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 34 0.064
11_04_0295 - 15988738-15988794,15988890-15988932,15989072-15989217 30 1.4
08_02_0311 - 15635165-15635590,15635777-15638698 29 3.2
01_05_0435 + 22117612-22117756,22118054-22118070,22119154-221192... 28 4.2
11_03_0116 - 10220821-10220937,10221414-10221497,10221613-102216... 28 5.5
02_03_0153 - 15776359-15776516,15776742-15776821,15776912-157769... 28 5.5
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 27 7.3
07_03_1498 + 26995209-26995752,26995945-26996513 27 9.7
06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540... 27 9.7
>03_02_0369 +
7843364-7843631,7844994-7845053,7845659-7845741,
7845834-7845898,7845965-7845998,7846102-7846172,
7850409-7850532,7851151-7851268,7851803-7851889,
7851972-7852055,7852127-7852209,7852556-7852624
Length = 381
Score = 85.4 bits (202), Expect = 3e-17
Identities = 38/100 (38%), Positives = 65/100 (65%)
Frame = +1
Query: 244 IPIQKLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEG 423
I + + ++++ S G GGQNVNKV+TKVD+RF + +A W+ I++R+L+ ++ K+G
Sbjct: 87 ITLDHVTLNFARSGGAGGQNVNKVNTKVDMRFNVKEAQWLGERIKERILQTEKNRINKDG 146
Query: 424 YLIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPSPE 543
L+I S TR+Q+ N+ D ++K++ +I A PS E
Sbjct: 147 ELVISSTKTRTQKGNIEDALQKIQAIIDAASYVPPPPSEE 186
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +1
Query: 244 IPIQKLDISYSASSGPGGQNVNKVHTKV 327
IP + L+IS++ + G GGQNVNKV T V
Sbjct: 384 IPEEDLEISFTRAGGKGGQNVNKVETAV 411
>11_06_0607 +
25437897-25438046,25438180-25438236,25438522-25438602,
25438720-25438777,25438888-25438991,25439064-25439115,
25439232-25439281,25440279-25440443,25440531-25440603,
25440714-25440846,25441146-25441203,25441411-25441458,
25441593-25441676,25441803-25441868,25442419-25442502
Length = 420
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 199 TPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLRFK 342
T A P+ +E I + +++ + S G GGQNVNKV T VDL K
Sbjct: 233 TVAIMPEADE-VDVVIDPKDIELKTARSGGAGGQNVNKVETAVDLIHK 279
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 34.3 bits (75), Expect = 0.064
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Frame = +1
Query: 49 PKMTLATLRLNFIRGLIK-NATCTALLQRPLGYKSSISLETLYPNSSLK-LTTPAFKPDG 222
PK+T+ L N RG I N +++LQ + + +S +P SS K L+ G
Sbjct: 457 PKLTVLDLSSNQFRGPIPANLLTSSMLQELYIHDNMLSGGLSFPGSSSKNLSLQVLDISG 516
Query: 223 NEKFSGFIP--------IQKLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDIR 378
N F+G +P +Q LDIS + SGP ++ K+ L ++ PD
Sbjct: 517 NH-FNGSLPDEIASLSSLQALDISTNNFSGPLPASITKLAALTALDISINQFTGSLPDAL 575
Query: 379 QRMLELYD 402
L+ ++
Sbjct: 576 PDTLQSFN 583
>11_04_0295 - 15988738-15988794,15988890-15988932,15989072-15989217
Length = 81
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 319 TKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRN 498
TKV+++ K HP+I +R++ + T + ++ + T S +L + M+ L++
Sbjct: 16 TKVEIKIKNVPEHANHPEIMERLVSFFCDAQTYRLHCMLDQNRTLSLKLKILKSMKTLKS 75
Query: 499 M 501
M
Sbjct: 76 M 76
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 169 LYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISY 273
+YP +S+ L F P FSGF +QKLDI++
Sbjct: 923 IYPFTSIFLLVYCFIP-ALSLFSGFFIVQKLDIAF 956
>01_05_0435 +
22117612-22117756,22118054-22118070,22119154-22119224,
22119314-22119377,22119673-22119720,22119805-22119867,
22119945-22120001,22120090-22120248,22120324-22120392,
22120477-22120568,22121129-22121207,22121756-22121918,
22122524-22122648,22122733-22122995,22123085-22123163,
22123254-22123415,22123551-22123655,22123782-22123876,
22123963-22124059,22124154-22124384
Length = 727
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 391 ELYDKKLTKEGYLIIKSDCTR 453
E +DK L KEG+ + DCT+
Sbjct: 311 ESFDKSLEKEGFAVAARDCTK 331
>11_03_0116 -
10220821-10220937,10221414-10221497,10221613-10221687,
10223267-10223318,10223367-10223413,10226277-10226333,
10226829-10226927,10229462-10229581,10229666-10229788,
10229988-10230104
Length = 296
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 418 EGYLIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPS 537
E LI+++ C+ A +RK + I++++VTK PS
Sbjct: 48 ETALIVQAYCSSGLTKEFAATLRKAHDFIKNSQVTKNCPS 87
>02_03_0153 -
15776359-15776516,15776742-15776821,15776912-15776983,
15777070-15777110,15777201-15777257,15777344-15777400,
15778441-15778517,15778652-15778760
Length = 216
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 142 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQN 303
YK SL+ + ++TP P GN+ + G P++ + + ++GP G N
Sbjct: 99 YKEGDSLKPAVTGVLVFVSTP--DPVGNKYYLGPAPLEDMARQIATANGPNGNN 150
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 295 GQNVNKVHTKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLI 432
GQN V D + D +R+R+L + D+ +EG+++
Sbjct: 783 GQNAKFVEVTPDTSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVL 828
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +1
Query: 88 RGLIKNATCTALLQRPLGYKSSISLETLYPNSSLKLTT-PAFKPDGNEKFSGFIPIQKLD 264
RG N C+ L R L + L+ + + ++ P N FS FIP D
Sbjct: 91 RGYSWNIKCSPLTDRKLLCTDNYGRHVLFNSEARQVEDLPFLNEPKNSTFSIFIPGAATD 150
Query: 265 ISYSASSGPGGQNV 306
+ +G GG ++
Sbjct: 151 TNGCDDNGGGGSSI 164
>06_02_0072 +
11152988-11153102,11153581-11153705,11153860-11154004,
11154219-11154284,11154418-11154540,11154839-11154961,
11156065-11156193,11156510-11156632,11156737-11156838,
11156943-11157065,11157169-11157270,11157370-11157492,
11157791-11157913,11158209-11158331,11158633-11158761,
11160210-11161039
Length = 867
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 136 LGYKSSISLETLYPNSSLKLTTPAFKPDGNEK 231
+ Y S++ L L+P + LK + + DG E+
Sbjct: 136 VSYDSNVKLSNLFPTAGLKEVSMTYGSDGEEE 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,989
Number of Sequences: 37544
Number of extensions: 248060
Number of successful extensions: 638
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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