Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7d21
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    60   2e-09
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    58   5e-09
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    55   6e-08
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    53   2e-07
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    29   3.3  
06_03_0237 + 18576317-18576412,18577273-18577778,18577906-185780...    28   7.6  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 32/77 (41%), Positives = 45/77 (58%)
 Frame = +2

Query: 2   DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 181
           +Q A   K L    ++   L LY  +KQATVGD + A RPG+   + +AK+DAW  + G 
Sbjct: 8   EQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDAWKAVEGK 66

Query: 182 SKEDAQKAYIEIVEGLI 232
           SKE+A   YI  V+ L+
Sbjct: 67  SKEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 31/76 (40%), Positives = 45/76 (59%)
 Frame = +2

Query: 2   DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 181
           ++ A  VK L    ++   L LY  +KQATVGD +  +RPG+   + +AK+DAW  + G 
Sbjct: 8   EEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDAWKAVEGK 66

Query: 182 SKEDAQKAYIEIVEGL 229
           SKE+A   YI  V+ L
Sbjct: 67  SKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 30/77 (38%), Positives = 43/77 (55%)
 Frame = +2

Query: 2   DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 181
           ++ A   K L    ++   L LY  +KQATVG      RPG+ +LK + K+DAW  + G 
Sbjct: 8   EEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDAWKAVEGK 66

Query: 182 SKEDAQKAYIEIVEGLI 232
           SKE+A   YI  V+ L+
Sbjct: 67  SKEEAMADYITKVKQLL 83


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/73 (41%), Positives = 43/73 (58%)
 Frame = +2

Query: 11  AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 190
           AA+  +  ++P  AQL  LY  +K AT G    A +P  L LK +AK++AWHKL     E
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTE 159

Query: 191 DAQKAYIEIVEGL 229
           +A + YI +V+ L
Sbjct: 160 EAMQKYITVVDEL 172


>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 523 RKGRKLFHCCSILCFSTLEVPFINV 449
           R GRK   CC IL F+   V F+NV
Sbjct: 418 RSGRKKSACCKILFFTIWNVFFVNV 442


>06_03_0237 +
           18576317-18576412,18577273-18577778,18577906-18578024,
           18578409-18578763,18578803-18578866,18578967-18579231,
           18579354-18579529
          Length = 526

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 380 HFCLKC-FFLRTQIHIDFIKLSCSYINERYFQGAKA 484
           H C+ C   LR  +H+   K+  +YI +RY +  K+
Sbjct: 467 HTCMFCTHMLRAFVHVQLEKIPAAYILKRYTKKVKS 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,112,414
Number of Sequences: 37544
Number of extensions: 302246
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)