Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7d15
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.88 
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   6.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +3

Query: 183  WTRTKRRRCTFVLSLTTSTVKQRTLQ--PKRTTTL 281
            WT T  RR T     TTST  + T    P + TT+
Sbjct: 1052 WTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTI 1086


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 182 MDENKAETMYLRAVPDDVNGEAKDSAAEENYDPHEHRQLPKPTNNIE 322
           +D+ + ET+ ++     V  EA+  A + + DP    +  KP   I+
Sbjct: 34  VDDARFETLVVKQTKQSVLDEARLRANDSSVDPEIDIE-DKPAQKID 79


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 566 RLARPASITVDIFLVV 613
           RLARPA+ + D++ V+
Sbjct: 712 RLARPANCSPDLYAVM 727


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/35 (28%), Positives = 12/35 (34%)
 Frame = -1

Query: 441 TRTPMSTVNTMPVTRPARANAWGMARMPVPRLHFS 337
           T +  STV T         N W +   P P    S
Sbjct: 303 TYSTWSTVQTPTTVMSPTINCWSLTSSPPPPYQIS 337


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 156 YVPLDSRSEWTRTKRRRCTFVLSLTTSTVKQRTLQPKR 269
           Y    + S W     +R    LSL  S ++Q+ L+ +R
Sbjct: 28  YRDCTTASSWPGRPPKRAPVGLSLAASHLQQQQLKKQR 65


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 332 GSGSQCYWSASAVAYVR 282
           G GS C  S+S++AY++
Sbjct: 19  GFGSTCGGSSSSMAYLK 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,634
Number of Sequences: 336
Number of extensions: 2538
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)