Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7d15
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    48   1e-06
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    29   0.40 
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    28   0.93 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   3.8  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   6.6  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   8.7  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
 Frame = +2

Query: 218 AVPDDVNGEAKDSAAEENYDP----HEHRQLPKPTN--NIETLIHLLKCSLGTGILAMPQ 379
           A+P DVN     S      +P    H   +L  P N  N + ++ LLK  +GTG+L +P+
Sbjct: 239 AMPRDVNPSLIHSTVPSEQEPLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVLFLPK 298

Query: 380 AFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 475
           AF   GLV      +++GVL   C  +L++++
Sbjct: 299 AFKLGGLVFSSATLLIVGVLSHICFLLLIQTR 330


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 149 QYLRSI-G*PIRMDENKAETMYLRAVPDDVNGEAKDSAAEENYDPHEHRQLPKPTNNIET 325
           +YLR +    ++ D  KAETM L     D + E   S      DP +H  +   T  IE+
Sbjct: 219 EYLRRLTAVRLQFDIMKAETMLLCRCDTD-HAEFITSVV----DPRDHAYVLGATTKIES 273

Query: 326 LIHLLKCSLGTGI 364
           LI  LK +  TG+
Sbjct: 274 LIKALKDAESTGV 286


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 564 LKGAGPTSSAAAMEAGYDSRGTRRCLQAAYCDRTSTWRQ 448
           L+G+G T++ + +   Y  RG + CL AA   R   + Q
Sbjct: 109 LQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQ 147


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 228 TTSTVKQRTLQPKRTTTLTNIGNCRSRP 311
           TT+T    T  P+ TTT      C SRP
Sbjct: 556 TTTTQVTYTTSPEETTTTMTTTTCSSRP 583


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 248 KDSAAEENYDPHEHRQLPKPTNNIETLIH 334
           +DS+    +DP  H  LP P+NN + + H
Sbjct: 61  QDSSISFTHDPL-HIPLPNPSNNNDNIFH 88


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 385 ERLGHGQDAGAQATFQQVD 329
           ERLG+  DAG  ATF ++D
Sbjct: 553 ERLGYMIDAGQAATFPKLD 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,153
Number of Sequences: 5004
Number of extensions: 40337
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)