Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7d10
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 42 6e-05
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 33 0.046
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.75
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 28 1.3
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 1.7
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 27 1.7
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 1.7
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 2.3
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 27 2.3
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 27 3.0
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 3.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.0
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.0
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 27 3.0
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 26 4.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.0
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.3
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 26 5.3
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 26 5.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.0
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.0
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 25 7.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.0
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.0
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 25 7.0
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 25 7.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 7.0
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.0
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 25 9.3
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 9.3
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 25 9.3
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 25 9.3
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 9.3
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 9.3
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 9.3
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 42.3 bits (95), Expect = 6e-05
Identities = 23/95 (24%), Positives = 42/95 (44%)
Frame = +3
Query: 261 NKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDL 440
N PKR ++ F F + R + NP + + + K W++L + ++ ++D
Sbjct: 14 NTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQDK 73
Query: 441 EDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEK 545
E Y + + Y+T L +K A AKE+
Sbjct: 74 ERYERERKEYDTKLANGEKTGKASAPAAAAAAKEE 108
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 32.7 bits (71), Expect = 0.046
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 363 AWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEE----MA 530
AW + + +L E + + E ++++ED N+ Y +S + Q +R EE A
Sbjct: 143 AWYAFNSHELSDEENSDSSNEREEEVEDDNRSVESYSSS--DYQARSRRRFSEETTQRRA 200
Query: 531 QAKEKRKLKAEYKEL 575
+ KEKRK + E+ +
Sbjct: 201 EIKEKRKKRKEFASI 215
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 0.75
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 414 MAKEYQKDLEDYNKIKAMYE--TSLTEEQKADIKRVKEE 524
M+++YQK LED K K+ YE +L +++ + K ++E
Sbjct: 464 MSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQE 502
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 420 KEYQKD--LEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYK 569
K++Q+ L D + +K + EQ D+KRV EE+++ ++K+ L+++ K
Sbjct: 102 KDWQEGELLPDGSNVKTLSRYPKVLEQ-VDMKRVNEELSKLQDKQILESQQK 152
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 1.7
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Frame = +3
Query: 252 LGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQ-MAK-- 422
+GL+K P F F+S +RP L A P A L K Q AK
Sbjct: 772 IGLDKNLN--APKFSFISNVRPKLFAYPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRA 829
Query: 423 EYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQ 533
E +K + N + + TEE++A + EE +Q
Sbjct: 830 EREKASKGSNDDEMKIDKKTTEEKEATPMEMDEEKSQ 866
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +3
Query: 387 QLDMETKTQMAKEYQKDLEDY---NKIKAMYETSLTEEQKADIKRVKEEMAQA--KEKRK 551
++D+E + K+Y+K D N +A E + + + +KR K+E +A +E +K
Sbjct: 122 KIDVEETEEKVKQYEKQNRDSIAANSARAAAEARILAQNEILLKRQKQEAREAAIREHQK 181
Query: 552 LKAEYKEL 575
K +++
Sbjct: 182 EKERREQV 189
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 351 KEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMA 530
+E A S W + + T+ + +K Y K A Y ++ +E+ KR K +
Sbjct: 426 REIPASDSIAWHSISKKLGTKSPESCRKQ---YEKTIASYSSNQRQEEDQGKKRKKRKKK 482
Query: 531 QAKEKRK 551
++K KRK
Sbjct: 483 KSKGKRK 489
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 321 LLAKNPGISSKEAIAWTSKHWQQL--DMETKTQMAKEYQKDLEDYNK 455
LL KN IS K + S ++QL ++ K +K YQK LED N+
Sbjct: 803 LLPKN--ISMKSYHSLFSSQFRQLFEELSNKETQSKLYQKRLEDLNE 847
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 411 QMAKEYQKDLEDYNKIKAMY 470
++A ++ +DL DYN IK +Y
Sbjct: 26 EVAVDFDRDLSDYNTIKGVY 45
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +3
Query: 414 MAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPKKP 593
+ K+ ++ ++ A E +++K ++ + E A E RK + E ELGR +
Sbjct: 21 LKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDA-EYRKAEREQIELGRKARA 79
Query: 594 MSSYFI 611
+Y++
Sbjct: 80 EGNYYV 85
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 3.0
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +3
Query: 288 FFKFMSQMR--PALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLE--DYNK 455
F +MS+ R +L+ K +A + K W+ ++ K A Y+K + +N+
Sbjct: 287 FTNWMSKRRRNESLIQKANVFFQHSVLAHSFKTWKA-NLSIKNA-ATLYEKKVVFMSFNR 344
Query: 456 IKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAE 563
A YE+ + + QKA++ K + A K KL+ E
Sbjct: 345 WHANYESHVLDLQKAELFSQKAYYSIALHKWKLRIE 380
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.0
Identities = 25/107 (23%), Positives = 38/107 (35%)
Frame = +3
Query: 267 PKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLED 446
P +PL P + ++P L N IA Q E +
Sbjct: 1728 PYQPLQPASAHLPNLQPTLAPINQNAYVPSNIAPAMGAMQSAPSAEAVAAPSESL----N 1783
Query: 447 YNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEYKELGRPK 587
NK ++ + AD+ R +EE + K+K K AE + G K
Sbjct: 1784 LNKDRSQQAKQAAAQNVADLVRQEEEKEKQKQKAKKNAESGKKGGAK 1830
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/83 (22%), Positives = 41/83 (49%)
Frame = +3
Query: 342 ISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKE 521
I +E ++ + D+E + + + + + + + + A E S E D + +E
Sbjct: 604 IEGQEEVSQDDEEGDFEDLEDE-ENSSDNEMEESSGSSVTAENEESADE---VDFQTERE 659
Query: 522 EMAQAKEKRKLKAEYKELGRPKK 590
E A+ KE+ +L+ E ++ G P+K
Sbjct: 660 ENARKKEELRLRFEEEDRGDPEK 682
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 3.0
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Frame = +3
Query: 156 FLGNYKTVLCGRVNWITPIQSCDYTKKSAEQRLGLNKPKRPLT-PFFKFMSQMRPALLAK 332
+LGN K + + + TKKS++QRL +N L + +++ + + +
Sbjct: 119 YLGNGKPIEASQTEESSSTPPSPATKKSSKQRLTMNSRDAALDYEEYLAIAKEKSLIPRR 178
Query: 333 NPGISSKEAIA--WTSKHWQQLDMETKTQMAKEYQKDLEDYNKIK----AMYETSLTEEQ 494
+ G +S ++++ Q ++ K ++ +E + LED + K ETS T
Sbjct: 179 SRGRTSSKSLSPPAPQDESQGTEINLKQKIEEENDEILEDSKESKDENEENKETSTTNVA 238
Query: 495 KADIKRVK-----EEMAQAKEKRKLKAEYKE 572
+ D + EE+A +EK +K E E
Sbjct: 239 ETDAPEEETVDTVEEIAD-EEKHSVKEESGE 268
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 4.0
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 420 KEYQKDLEDYNKIKAMYETSLTEEQK-ADIKRVKEEMAQAKEK-RKLKAEYKELGRPKKP 593
+E DLED+ ETS +EE++ ++ + ++E K K RK K + + R K+
Sbjct: 220 EEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKKRA 279
Query: 594 MSSYFIYMQSRKD 632
+ Y Q R++
Sbjct: 280 PHIHIEYEQEREN 292
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 420 KEYQKDLEDYNKIKAMYE 473
KEY+ L+DYN+++A Y+
Sbjct: 1063 KEYKSLLDDYNQLRARYK 1080
Score = 25.0 bits (52), Expect = 9.3
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 393 DMETKTQMAKEYQKDLEDYN----KIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKA 560
D + KE QK+LE YN K + +++T+E + +K ++E + +
Sbjct: 996 DKNELEERLKEIQKELEVYNNHFMKQAELMTSNVTDESQLMLKTLREALQSKTNNIDHLS 1055
Query: 561 EYKELGRPK-KPMSSYFIYMQSRKDNIQ 641
E R + K + + +++R N+Q
Sbjct: 1056 TILERNRKEYKSLLDDYNQLRARYKNLQ 1083
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = +3
Query: 471 ETSLTEEQKADIKRVKEEMAQAKEKRKLKAE-------YKELGRPKKPM 596
ETSLTEEQK ++ +++ A + + E ++L +P +P+
Sbjct: 807 ETSLTEEQKIQLEEARKQRKAADDAARAAIEKYTSIPSLRDLHKPTRPL 855
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 447 YNKIKAMYETSLTEEQKADIK-RVKE--EMAQAKEKRKLKAEYKELGRPKKP 593
Y K K+ + + Q K R KE E+A +++R+L A KEL +P
Sbjct: 190 YGKKKSTEPLTKRQRQNQQKKLRAKEMQELADEEQRRRLAAHRKELHEANRP 241
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 273 RPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYN 452
RP F + + LL NP I++ + + W+ E+K ++ Y K E Y
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN---ESK-EVRMRYFKMSEFYK 160
Query: 453 -KIKAMYETSLTEEQKADIKR 512
+ + MY + +K +KR
Sbjct: 161 AQHQKMYPGYKYQPRKNKVKR 181
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 273 RPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKDLEDYN 452
RP F + + LL NP I++ + + W+ E+K ++ Y K E Y
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN---ESK-EVRMRYFKMSEFYK 160
Query: 453 -KIKAMYETSLTEEQKADIKR 512
+ + MY + +K +KR
Sbjct: 161 AQHQKMYPGYKYQPRKNKVKR 181
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 393 DMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQ 494
D + + KE +DLE N + A E +L EEQ
Sbjct: 1608 DAKLMEKTLKEVIEDLEKNNSLHAYEEEALNEEQ 1641
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +3
Query: 390 LDMETKTQMAKEYQ-------KDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKR 548
+D+E + +A+E Q +D + YN + +M SLT E+ ++ + K+E+ A+
Sbjct: 1123 VDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKKKDEV-MAELDA 1181
Query: 549 KLKAEYKEL 575
+K KEL
Sbjct: 1182 LIKKTPKEL 1190
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 387 QLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEY 566
+++ E ++ ++KE + E + ET TEE K + AKE+ KL
Sbjct: 96 EIEKENESIISKETSQAPETSTGAEEHQET--TEESKQSVSNEVSSPDVAKEQEKLIQRA 153
Query: 567 KELGRP 584
K G P
Sbjct: 154 KRFGIP 159
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +3
Query: 213 QSCDYTKKSAEQR--LGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKEAIAWTSKHWQ 386
+S DY+K E+ LGL++ + + + G+S +E IA+ + Q
Sbjct: 535 KSSDYSKNEVEREIMLGLDQIAQERREKMEARQKFEQHFGEGLVGLSEEEIIAYVTMLSQ 594
Query: 387 QLDMETKTQMAKEYQKDLEDYNKIKAMYETSL 482
+ + + Q++ + K ED+ + +SL
Sbjct: 595 EEEAKRMVQLSMDVDKIEEDFKENDEQATSSL 626
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 635 IIFSRLHVYKV*RHWFLR 582
I +S+L VY+ RHW L+
Sbjct: 62 IFYSKLRVYQTVRHWSLK 79
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 423 EYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEE-MAQAKEKRKLKAEYKELGR 581
EY DLE+ K+K L ++ D ++ ++ + +A++ + +E K++ R
Sbjct: 99 EYLNDLEELKKLKGQKVIRLVHDESGDEEQNDDDGLTEAQDAVQKGSELKKMCR 152
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 637 ILSFLDCMYIKYEDIGFLGRPSSLYSAFNFLFSLAC--AISSLTLFISAFCSSV 482
+L+ L Y+KY+D F ++ ++ F F + L C A+ LT F + +V
Sbjct: 86 VLNVLAICYLKYKDAFFKNYGAAEWTLFGF-WCLVCTLALIFLTYFYETWTKAV 138
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 411 QMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKL 554
+++++ +DL D K++ ETS T + ++ E++ Q K+ RKL
Sbjct: 679 EISRKMFEDLADL-KVRRNPETSRTVMDRRTFQQTLEKLMQEKKVRKL 725
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 7.0
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +3
Query: 420 KEYQKDLED-YNKIKAMYETSLTEEQKADIKRVK---EEMAQAKEKRKLKAEYKELGRPK 587
K + K+ N ++A + + E ++ I+R + EE+A+++E+ + KAE ++ K
Sbjct: 492 KRFDKEASGRINDLRAEQQQIMLEARQKAIERRRNEEEELARSRERARKKAEEIKISSSK 551
Query: 588 KPMSSYFIYMQSRKDNIQ 641
M+S R N++
Sbjct: 552 --MNSSPTITNERSSNVE 567
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 375 KHWQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEE 491
+ W+ L M ++ + +LE YN A +E S +E
Sbjct: 694 REWKSLMMHNSYTVSVKKHPELEGYNAKLARFERSFLDE 732
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 356 LFG*YARVLGKKSWS 312
LFG Y+ +LGK WS
Sbjct: 277 LFGVYSSILGKNKWS 291
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 381 WQQLDMETKTQMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKR 512
W DME+ ++ ++ + + Y+ + A + EQKA +K+
Sbjct: 372 WVARDMESGQEVVLDFVVERKRYDDLVASIKDGRFHEQKARLKK 415
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 214 CIGVIQFTLPHRTVL*FPKK*LLRRCN 134
C+ + F P+ +L FP +LR+CN
Sbjct: 173 CMALTVFINPNALLLFFPSYLILRKCN 199
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 411 QMAKEYQKDLEDYNKIKAMYETSLTEEQKADIKRVKEEMAQAKEKRKLKAEY 566
+ A+ + ++E K + E + K VKE+ +EKRK K E+
Sbjct: 491 EQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEVKEKRNTRREKRKSKKEF 542
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.0 bits (52), Expect = 9.3
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Frame = +3
Query: 300 MSQMRPALLAKNPGISSKEAIAWTSKHWQQLDMETKTQMAKEYQKD----LEDYNKIKAM 467
+SQ NP +E A + +++ E KT +++ Q+ + N+++
Sbjct: 370 ISQDHSVFREVNPSAKLEEERALHEEKLMKMEAEMKTIFSQKVQEKEDRLKQSENELRTR 429
Query: 468 YET--SLTEEQKADIKRVKEEMAQAK---EKRKLKAEY 566
+ + E+QKAD+ K + QAK E K K ++
Sbjct: 430 HREMKAALEKQKADLIDHKNRLMQAKAAAENEKSKRKF 467
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 483 TEEQKADIKRVKEEM-AQAKEKRKLKAEYKEL 575
T++Q D+K+ KEEM + K KL+ E + L
Sbjct: 119 TQKQIEDLKKEKEEMEGSLQGKEKLEREVENL 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,676
Number of Sequences: 5004
Number of extensions: 50784
Number of successful extensions: 182
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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