Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7d08
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688... 31 1.1
03_04_0101 - 17283293-17284009 29 2.6
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058... 29 3.4
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 29 4.5
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 29 4.5
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 28 6.0
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689... 28 6.0
02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719... 28 6.0
01_06_0138 + 26865895-26865953,26866628-26867870 28 7.9
>11_06_0014 -
19267601-19267831,19268338-19268454,19268733-19268890,
19269501-19269612,19269721-19269908,19270344-19270436,
19270521-19270708,19271635-19271720,19272662-19272811,
19273930-19274065,19274143-19274222,19275546-19275626,
19276114-19276245,19276490-19276610,19277457-19277518,
19277846-19277974,19278514-19278573,19278689-19278772,
19278852-19279532
Length = 962
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 480 DEEFRVALENLQSEEWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKELFAIFGQN 650
D + + N E + VF +L ++ F+A++DT EHG D + + + A F N
Sbjct: 348 DSDAQTEKRNAAQEIFSPVFSSLLDALLFRAQIDT-DEHGTDGELCIPDGLAQFRMN 403
>03_04_0101 - 17283293-17284009
Length = 238
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 18 PGKMKVAIVFMGLIALGFSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLFEHY 176
PG ++ A MGL+A ++LP P +E+ R L + D+ HD LF Y
Sbjct: 81 PGAIRAA---MGLVASVYALPPPHAGTLEDARLILGKVFDD-HHDATWLFRLY 129
>06_03_0712 +
23803597-23803945,23804118-23805479,23805743-23805811,
23806050-23806330,23806817-23807076,23807521-23807689,
23807796-23808068,23808251-23808499
Length = 1003
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 656 QLVLSEDGEEFFHEDVYVNTVFSKGINFGLELL 558
+L L E G F HEDV ++ +FS ++ +E L
Sbjct: 802 ELQLEEGGTLFTHEDVKMSEIFSSALSVDVESL 834
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 643 PKMAKSSFMRTCTSIPCSARVSTSALNCSLSHRAP 539
P MA + R C SI S R AL L HR P
Sbjct: 46 PLMALNHISRLCKSIDASVRFYVKALGFVLIHRPP 80
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 351 IGERVKRARHTLSGRDFTSYIND 419
+G+R+ R R L G+ + +YIND
Sbjct: 92 VGQRIARGRFVLDGKVYHTYIND 114
>06_01_0185 -
1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 584 GINFGLELLTLPQSTEHGV-PFLALKVLKSYSKFFVLSEFLFVQG 453
G + G L+ PQ EH + PFLALK+ + + +L + ++G
Sbjct: 672 GDDCGDSSLSAPQREEHRIGPFLALKIFHTNREILLLKAYSGLKG 716
>05_03_0328 -
12468142-12468262,12468443-12468641,12468758-12468974,
12469896-12469994,12470843-12470899,12470943-12472577
Length = 775
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 399 FTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSEEWDAVFGALWESEQFKAEV 578
F Y+ I E D+ LYE+ L + +V + + E + G ESE+ K EV
Sbjct: 596 FNEYLQFEIDENEFDRTRELYERLLDRTKHLKVWISYTEFEASAGLAGEDGESEEIKKEV 655
>02_05_1289 -
35470076-35470243,35471032-35471108,35471935-35471971,
35472559-35472618,35472693-35472769,35473244-35473364,
35473505-35473597,35473708-35473770,35475195-35475245,
35475384-35475511,35476249-35476343,35476345-35476427,
35476653-35476808,35477046-35477182,35477243-35477252,
35477291-35477380,35477771-35478070,35479054-35479120,
35479382-35479469,35480317-35480373,35480469-35480592
Length = 693
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 625 SFMRTCTSIPCSARVSTSALNCSL 554
SF R T+ PCSAR ++S+ N SL
Sbjct: 594 SFFRFITNFPCSARNNSSSGNSSL 617
>01_06_0138 + 26865895-26865953,26866628-26867870
Length = 433
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 532 PCSVLCGRVSNSRPKLI 582
PCS+ CGR+ N R KL+
Sbjct: 310 PCSLTCGRLLNLREKLV 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,261,939
Number of Sequences: 37544
Number of extensions: 282554
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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