Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7d02
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.2  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   5.1  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   5.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 193  PKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 297
            P++TT ++T  + +  +H  WT   +   SS   S
Sbjct: 1015 PQVTTGVDTGASSTEHMHPDWTTKPSTWWSSTTTS 1049



 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 114  PDPFFAQPTVGNGYEP 161
            P P   +PT   GYEP
Sbjct: 2210 PKPTTMKPTTTIGYEP 2225


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 123 FFAQPTVGNGYEPIDNRPYIVNPPKDYN 206
           F  + T    YE     P I  PP D+N
Sbjct: 26  FLQEKTTYEYYENNQALPPITYPPSDWN 53


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 174 PYIVNPPKDYNPNGNGYE 227
           P+IV  P++ NP+   Y+
Sbjct: 192 PFIVRVPEEDNPHAKLYD 209


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 123 FFAQPTVGNGYEPIDNRPYIVNPPKDYN 206
           F  + T    YE     P I  PP D+N
Sbjct: 17  FLQEKTTYEYYENNQALPPITYPPSDWN 44


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 258 PPQGRPYFKPTPF 296
           PPQG PY +  P+
Sbjct: 74  PPQGMPYPRFPPY 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,092
Number of Sequences: 336
Number of extensions: 2471
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)