Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7d01
         (156 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124; Eukar...    40   0.011
UniRef50_UPI000155D3ED Cluster: PREDICTED: similar to ribosomal ...    39   0.018
UniRef50_Q91KX4 Cluster: ME-53; n=2; Epinotia aporema granulovir...    31   3.7  

>UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124;
           Eukaryota|Rep: 60S ribosomal protein L18 - Homo sapiens
           (Human)
          Length = 188

 Score = 39.9 bits (89), Expect = 0.011
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = +1

Query: 25  MGIDINHKHDRKVRRTEVKSXDIXXXXXXXXXXXXXXXTNAKFN 156
           MG+DI H  DRKVRR E KS DI               TN+ FN
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFN 44


>UniRef50_UPI000155D3ED Cluster: PREDICTED: similar to ribosomal
           protein L18; n=1; Ornithorhynchus anatinus|Rep:
           PREDICTED: similar to ribosomal protein L18 -
           Ornithorhynchus anatinus
          Length = 188

 Score = 39.1 bits (87), Expect = 0.018
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +1

Query: 25  MGIDINHKHDRKVRRTEVKSXDIXXXXXXXXXXXXXXXTNAKFN 156
           +G+DI H  DRKVRR E KS DI               TN+ FN
Sbjct: 110 LGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFN 153


>UniRef50_Q91KX4 Cluster: ME-53; n=2; Epinotia aporema
           granulovirus|Rep: ME-53 - Epinotia aporema granulovirus
          Length = 317

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 99  QVNIXRFNFGAPN-FPVVFMIDVNTHLDNQKKKS 1
           +V+   FNF  P  F   FM D+N HLDN KK S
Sbjct: 156 RVDHNTFNFDKPLVFTKKFMHDINQHLDNDKKFS 189


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,164,229
Number of Sequences: 1657284
Number of extensions: 1521741
Number of successful extensions: 2784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2781
length of database: 575,637,011
effective HSP length: 32
effective length of database: 522,603,923
effective search space used: 9929474537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)