Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7d01
         (156 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   2.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   4.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   5.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   7.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   7.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   7.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 20  SRWVLTSIINTT 55
           +RW  TS+I TT
Sbjct: 779 TRWPATSVITTT 790


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 141 CTSGQVSVKLXK*PQVNI 88
           CT  Q  ++L + PQ+N+
Sbjct: 168 CTGYQQYLRLLEVPQINL 185


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 63  SAHRS*ISRYLLEVTXKALQILGQTYK 143
           S H+      +  +  KA+Q+LG T K
Sbjct: 37  SVHQVYPENLIPRLAKKAIQVLGVTEK 63


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 156 IEFGICTSG 130
           +EFG+C  G
Sbjct: 382 VEFGLCKEG 390


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 142 LYVWPSICKA 113
           LY  PSIC A
Sbjct: 176 LYTTPSICTA 185


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 142 LYVWPSICKA 113
           LY  PSIC A
Sbjct: 171 LYTTPSICTA 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,774
Number of Sequences: 438
Number of extensions: 465
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)