Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7c20
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 115 4e-27
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 57 2e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 47 2e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.12
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.12
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.21
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.28
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.49
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.49
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.6
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 6.1
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 6.1
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 6.1
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 6.1
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 8.0
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 8.0
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 8.0
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 115 bits (277), Expect = 4e-27
Identities = 58/145 (40%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Frame = +2
Query: 182 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 355
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 356 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATQTCYNCNKSG 502
GH+ R+C SP+ CY C + GHIAR+C G++S + CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 503 HISRNCPDGTKTCYVCGKPGHISRE 577
H +R+C G K CY CGK GH S E
Sbjct: 126 HQARDCTMGVK-CYSCGKIGHRSFE 149
Score = 99.5 bits (237), Expect = 3e-22
Identities = 53/150 (35%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Frame = +2
Query: 176 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC-----KEEADRC 340
S+CY CN+TGH A ECT+ +Q + C+ C GH RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 341 YRCNGTGHIARECAQSPDEP-----------SCYNCNKTGHIARNCPEGGRESATQTCYN 487
Y+C GHIAR+C + + +CY C GH AR+C G + CY+
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK------CYS 139
Query: 488 CNKSGHISRNCPDGT--KTCYVCGKPGHIS 571
C K GH S C + + CY C +PGHI+
Sbjct: 140 CGKIGHRSFECQQASDGQLCYKCNQPGHIA 169
Score = 95.9 bits (228), Expect = 4e-21
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Frame = +2
Query: 263 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 442
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 443 CPEGGRESATQTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISRE 577
CP CY C + GHI+R+C +G ++ CY CG GH +R+
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARD 130
Score = 93.5 bits (222), Expect = 2e-20
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 152 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEE 328
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 329 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 445
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 31.9 bits (69), Expect = 0.070
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 164 AMSSSVCYKCNRTGHFARECT 226
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +2
Query: 263 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 424
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 425 GHIARNCPEG--GRESATQTCYNCNKSGHISRNCPDGTK 535
GH++ C + G C C+ H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Frame = +2
Query: 182 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 349
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDN-----VSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 350 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 472
+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +2
Query: 371 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 538
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 539 CYVCGKPGHIS 571
C++C + GH+S
Sbjct: 126 CFICHENGHLS 136
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 176 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE-------EAD 334
S+C++C H C++ G + + KCF C+ GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 335 RCYRCNGTGHIARECAQ 385
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 30.3 bits (65), Expect = 0.21
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 152 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 325
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 47.2 bits (107), Expect = 2e-06
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Frame = +2
Query: 290 NRTGHFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSCYNCNK 421
+R +F D E+ C+ C G GHI+++C + P C NC
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGL 132
Query: 422 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 523
GHIA C E R+ + C C+ H S CP
Sbjct: 133 LGHIAARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 43.6 bits (98), Expect = 2e-05
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 404 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHIS 571
C+NC GHI+++CP C C HIS CP TK C CG GHI+
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIA 137
Score = 41.1 bits (92), Expect = 1e-04
Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 6/130 (4%)
Frame = +2
Query: 173 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 334
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 335 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 514
R R T H + + Y K + + E + CYNC H
Sbjct: 146 RGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSE-----VRKFCYNCASDEHFGD 200
Query: 515 NCPDGTKTCY 544
+C +++ Y
Sbjct: 201 DCTLPSRSNY 210
Score = 35.1 bits (77), Expect = 0.007
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 452 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGK-PGHIS 571
G S + C+NC +GHIS++CP C CG HIS
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHIS 118
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 404 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 523
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +2
Query: 266 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 400
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +2
Query: 458 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRE 577
R+ Q C NC GH +CP+ C CG GHI+R+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARD 348
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 173 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 319
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 503 HISRNCPDGTKTCYVCGKPGHISRE 577
H + CP TCY CGK H RE
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLRE 1818
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 176 SVCYKCNRTGHFAREC 223
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 302 HFARDCKEEADRCYRCNGTGHIAREC 379
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 476 TCYNCNKSGHISRNC 520
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 8.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 278 CFKCNRTGHFARDCK 322
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 503 HISRNCPDGTKTCYVCGKPGHISRE 577
H + CP TCY CGK H RE
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLRE 1818
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 176 SVCYKCNRTGHFAREC 223
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 302 HFARDCKEEADRCYRCNGTGHIAREC 379
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 476 TCYNCNKSGHISRNC 520
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 8.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 278 CFKCNRTGHFARDCK 322
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.21
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 440 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 550
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.28
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 383 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 553
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.49
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 455 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 559
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 383 QSPDEPSCYNCNKTGHIARN--CPEGGR 460
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 29.1 bits (62), Expect = 0.49
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +2
Query: 158 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR-DCKEEAD 334
P A +V K N GH E G V +S + K + +R G F+R +
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSS 443
Query: 335 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 478
R + + H +PD P+ + ++ G+++ T+T
Sbjct: 444 RMKKGSKAKH-----EDAPDVPAIPHAYIADSSTKSSYRNGKKTPTRT 486
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 260 NRQREKCFKCNRTGHFARDCKEEA 331
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 278 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 403
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 371 RECAQSPDEPS-----CYNCNKTGHIARNCP 448
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 479 CYNCNKSGHISRNCPDGTKTCYVCGKP 559
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
Score = 25.4 bits (53), Expect = 6.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 179 VCYKCNRTGHFAREC 223
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 270 VRSASSATAQDTLRGIARKRLTVA 341
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 6.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 452 GGRESATQTCYNCNKSG 502
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/70 (22%), Positives = 27/70 (38%)
Frame = -2
Query: 527 RRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRY 348
++DS +CCS + + + P S CCS T+ + ++
Sbjct: 228 KKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQE-KKGCCSTEKTSCCSQEKKSCCTSEKPS 286
Query: 347 ICSNGQPLPC 318
CSNG+ C
Sbjct: 287 CCSNGKSTVC 296
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 488 SYSRSASQTPAPPRDSSVRCGPSCCSCN 405
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 8.0
Identities = 17/77 (22%), Positives = 28/77 (36%)
Frame = +2
Query: 248 DSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTG 427
D +E KC+ T F ++C E+ D N G E + S +
Sbjct: 87 DQNSELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATGLRSIRYAKELP 146
Query: 428 HIARNCPEGGRESATQT 478
++ R E+A +T
Sbjct: 147 NVKRILANDLLENAVKT 163
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 477 VCVADSRPPSGQFRAMWP 424
V ++D RPP + RA WP
Sbjct: 302 VSISDYRPPKKRKRAAWP 319
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 257 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 355
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,441
Number of Sequences: 5004
Number of extensions: 40542
Number of successful extensions: 199
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -