Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7c13
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 87 1e-17
03_05_1105 + 30438140-30438350,30438448-30438926 87 2e-17
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 85 6e-17
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 76 2e-14
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 76 3e-14
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 44 1e-04
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 43 2e-04
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157... 29 3.2
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 29 3.2
11_04_0293 + 15926561-15928834 29 4.3
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 7.5
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 87.0 bits (206), Expect = 1e-17
Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 7/132 (5%)
Frame = +3
Query: 156 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFIL----SMGTL 323
++R AFIRKVY +++VQLL TV++A VEP++TF +++A+++ + +
Sbjct: 31 QLRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTFFQARTPEVLVAYVIIIISPLIMM 90
Query: 324 IALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL- 500
+ +I R P NL+ L FTV ++++G+ N V+ QA +T A+V LT YT
Sbjct: 91 LPMIYFRNKHPINLFFLLLFTVCISFSVGLGCLSKNGTVIFQAAGMTAAIVIGLTCYTFW 150
Query: 501 NSKR--DFSFIG 530
+KR DF F+G
Sbjct: 151 AAKRGYDFEFLG 162
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 86.6 bits (205), Expect = 2e-17
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Frame = +3
Query: 156 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNN---WMMIIAFILSMGTLI 326
++R AF+RKVY +L++Q+L T+++A+V +FV PV F + + I IL L
Sbjct: 14 QLRWAFVRKVYAILSIQMLLTIAVASVVVFVRPVALFFVSTPAGFALYIFLIILPFIVLC 73
Query: 327 ALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTLNS 506
L + P NL LLA FT ++ +G+ ++ V+L++ LT AVV SLT YT +
Sbjct: 74 PLYYYYQRHPVNLLLLALFTAAISFAVGLTCAFTKGEVILESAILTAAVVVSLTAYTFWA 133
Query: 507 KR---DFSFIG 530
R DFSF+G
Sbjct: 134 ARRGHDFSFLG 144
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 84.6 bits (200), Expect = 6e-17
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 6/136 (4%)
Frame = +3
Query: 141 MNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFI---HTNNWMMIIAFILS 311
M E+R A IRK+Y +L++QLL T ++AAV + V + F H + I IL
Sbjct: 25 MTEPPEMRWALIRKIYVILSMQLLLTAAVAAVVVKVRAISHFFVSSHAGLGLYIFLIILP 84
Query: 312 MGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTL 491
L L + P NL LL FTV ++ +G+ ++ + V+L++ LT VVFSLT
Sbjct: 85 FIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFTSGKVILESAILTTVVVFSLTA 144
Query: 492 YTL---NSKRDFSFIG 530
YT RDFSF+G
Sbjct: 145 YTFWAAKRGRDFSFLG 160
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 76.2 bits (179), Expect = 2e-14
Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Frame = +3
Query: 156 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPV-QTFIHTNNWMMIIAFILSMGTLIAL 332
++R A I K+Y +L+VQL T ++AA + V V + F+ +N + F+L + ++
Sbjct: 26 DLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSEFFVSSNAGFALYIFLLFLPLIVLC 85
Query: 333 IVK--RRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL-N 503
++ + P NL LL FTV ++ +G+ +Y + V+ +A ALT VV SLT YT
Sbjct: 86 PLRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSGKVIFEAAALTAVVVISLTAYTFWA 145
Query: 504 SKR--DFSFIG 530
+KR DF+F+G
Sbjct: 146 AKRGHDFNFLG 156
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/133 (30%), Positives = 70/133 (52%)
Frame = +3
Query: 138 VMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMG 317
+ E +R F+RKVYG+L QLL T +++A+ + + + ++ + ++ +L
Sbjct: 44 ISRGESALRWGFVRKVYGILAAQLLLTTAVSALTVLHPTLNATLSSSPTLALVLAVLPFV 103
Query: 318 TLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYT 497
++ L + P N L FT+ +++IGV + +VL+AL LT AVV SLT YT
Sbjct: 104 LMVPLYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKIVLEALILTSAVVASLTAYT 163
Query: 498 LNSKRDFSFIGYM 536
+ + GY+
Sbjct: 164 FWASKKGKEFGYL 176
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 93 GGKESVEDDFAYRNNVMNAEREIRL--AFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTF 266
G KE V + R V E + RL AF+RKVY +L +Q T +IA V V P+ F
Sbjct: 55 GEKEVVAEKAPARRKVAAEEEDPRLRWAFVRKVYCILALQFAVTAAIAVVAWAVRPIPRF 114
Query: 267 IHTN---NWMMIIAFIL 308
+W++ +A +L
Sbjct: 115 FAAGSLASWLVYLAILL 131
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 156 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFIL 308
E+R AFIRKVY ++ QL+ TV+IAA V ++ F + AF+L
Sbjct: 41 ELRWAFIRKVYAIVATQLVVTVAIAAAVYSVPAIRRFFLARTPASLAAFVL 91
Score = 41.5 bits (93), Expect = 6e-04
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Frame = +3
Query: 210 LATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTV 389
+ +A +M P + I+A L + IA V + +L
Sbjct: 26 VGVAGVACTYMIERPELRWAFIRKVYAIVATQLVVTVAIAAAVYSVPAIRRFFLARTPAS 85
Query: 390 IQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL-NSKR--DFSFI 527
+ A+ + +V + +++A +LTF +VF LTLYT +KR DFSF+
Sbjct: 86 LAAFVLVIVAPLIAGIAIIEAASLTFGLVFGLTLYTFWAAKRGHDFSFL 134
>11_08_0094 -
28314681-28314747,28315264-28315353,28315589-28315725,
28317020-28317589
Length = 287
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 57 IPLMYAQEDCELGGKESVED-DFAYRNNVMNAEREIRLAFIRKV 185
+PL Y +DC++ G + ++D D A N + E + RL + +V
Sbjct: 191 LPLFYFGDDCDMWGGDMLKDTDIALAPNFPSDEGQKRLEHLHRV 234
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 320 SDCIDRETTRFTRQSVSPGCIYCYPSVHHRRCRVILQ 430
SD + ++FT P CY +HH +C V LQ
Sbjct: 169 SDSLLYSVSQFTLLGTDPYHKLCYKELHHPKCDVCLQ 205
>11_04_0293 + 15926561-15928834
Length = 757
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 653 EEHAEEYRADDGQSHFEGGALHHQLKKTPQNENCQTSYEHVSNE 522
+E EEY +DDG+ +GG L L + Q+ + +T E S +
Sbjct: 360 DEEEEEYLSDDGKDDDDGGGLQAPL-LSRQSTDVETKNEPASGQ 402
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 299 SNDHHPIIGVYKC--LYGLNKHKYSRNGDRSQELHCQETVD 183
S+ +HP++ + +Y +NK K +R+ L CQE+ D
Sbjct: 686 SSQNHPMLSYVELRNVYRINKGKLTRDNSGPGNLTCQESFD 726
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,022,968
Number of Sequences: 37544
Number of extensions: 390233
Number of successful extensions: 974
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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