Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7c13
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily ass... 102 2e-22
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 76 2e-14
Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical p... 58 4e-09
Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical pr... 58 4e-09
U41007-7|AAA82268.3| 516|Caenorhabditis elegans Intramembrane p... 30 1.6
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 28 6.7
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 28 6.7
AC006833-9|AAF60943.1| 318|Caenorhabditis elegans Saposin-like ... 28 6.7
Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical p... 27 8.8
Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical pr... 27 8.8
L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin fam... 27 8.8
EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform... 27 8.8
AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel... 27 8.8
AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologou... 27 8.8
AC006677-10|AAF39946.1| 330|Caenorhabditis elegans Serpentine r... 27 8.8
>U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily
assigned gene nameprotein 132 protein.
Length = 276
Score = 102 bits (245), Expect = 2e-22
Identities = 57/132 (43%), Positives = 79/132 (59%)
Frame = +3
Query: 138 VMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMG 317
V A R IR+AF+RKV G++ QLL T+ I A + + + W++ + S+
Sbjct: 62 VGKANRMIRIAFLRKVLGIVGFQLLFTIGICAAIYNIPNSNQLLQKHAWIVFPNLLGSIA 121
Query: 318 TLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYT 497
+IAL V R+ P N LLAAFT +QA T+G VV+ + VVL+A +T VV SL YT
Sbjct: 122 LIIALHVYAREVPLNYVLLAAFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYT 181
Query: 498 LNSKRDFSFIGY 533
L +KRDFS +GY
Sbjct: 182 LQNKRDFS-VGY 192
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 76.2 bits (179), Expect = 2e-14
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Frame = +3
Query: 96 GKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHT 275
G + +DD + N+ + + +R AF+RKV+ L+T+ T + + M EP Q ++
Sbjct: 6 GATTAQDDPDGKYNLHFSSQTVRAAFVRKVFMLVTIMFAITAAFCVIPMVSEPFQDWVKN 65
Query: 276 NNWMMIIAFILSMGTLIALIV---KRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVL 446
N W+ IA I+ + IAL RR P N+ LL FT+ A V + YN VL
Sbjct: 66 NFWVYFIAIIVFLVVAIALSCCGNLRRQFPVNIILLTIFTLSAAVMTMFVTACYNVQSVL 125
Query: 447 QALALTFAVVFSLTLYTLNSKRDFS 521
L +T S+ ++++ +K D +
Sbjct: 126 ICLCITTVCSGSVIIFSMKTKSDLT 150
>Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1a protein.
Length = 296
Score = 58.4 bits (135), Expect = 4e-09
Identities = 34/157 (21%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Frame = +3
Query: 78 EDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPV 257
E+ + GG ++ + ++++ + ++ +R AF+RKV+ L+ + L ++ + +
Sbjct: 56 ENGQHGGGDNPDGKYSFQFS----DKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDT 111
Query: 258 QTFIHTNNWMMIIAFILSMGTLIALIV---KRRDSPANLYLLAAFTVIQAYTIGVVVSYY 428
+ N+ + + ++++ T ++L+ RR P NL + FT+ + V+ +++
Sbjct: 112 MRMVRRNSALYLGSYVIFFVTYLSLVCCEGVRRKFPVNLIVTGIFTLATSVMTMVISAHH 171
Query: 429 NTMVVLQALALTFAVVFSLTLYTLNSKRDF-SFIGYM 536
+ VVL ALA+ FS+ + +K D + +GY+
Sbjct: 172 DANVVLLALAICIGCTFSIVIVASQTKFDLTAHMGYI 208
>Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1b protein.
Length = 296
Score = 58.4 bits (135), Expect = 4e-09
Identities = 34/157 (21%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Frame = +3
Query: 78 EDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPV 257
E+ + GG ++ + ++++ + ++ +R AF+RKV+ L+ + L ++ + +
Sbjct: 56 ENGQHGGGDNPDGKYSFQFS----DKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDT 111
Query: 258 QTFIHTNNWMMIIAFILSMGTLIALIV---KRRDSPANLYLLAAFTVIQAYTIGVVVSYY 428
+ N+ + + ++++ T ++L+ RR P NL + FT+ + V+ +++
Sbjct: 112 MRMVRRNSALYLGSYVIFFVTYLSLVCCEGVRRKFPVNLIVTGIFTLATSVMTMVISAHH 171
Query: 429 NTMVVLQALALTFAVVFSLTLYTLNSKRDF-SFIGYM 536
+ VVL ALA+ FS+ + +K D + +GY+
Sbjct: 172 DANVVLLALAICIGCTFSIVIVASQTKFDLTAHMGYI 208
>U41007-7|AAA82268.3| 516|Caenorhabditis elegans Intramembrane
protease (impas)family protein 3 protein.
Length = 516
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 330 LIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL 500
+I+ RD+ N LAA ++ VV Y++M A+TFA VF+ ++++
Sbjct: 419 MILVPRDTKGNKQSLAALDIMVPGVFLNVVLKYSSMYDTNLFAITFAAVFASLVFSV 475
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 210 GAALSGDRRLSV*RRDGSPFQHSLHCC 130
G AL+G + + + PFQH HCC
Sbjct: 485 GYALNGHMDALLSQLEALPFQHHFHCC 511
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = -1
Query: 571 PPKMRTVKPATSMYPMNEKSRLELSVYSVRENTTANVKARACNTTMVL*YDTTTPMVYAW 392
PP T++ T ++ VY+V N T NV A AC ++ V +V W
Sbjct: 539 PPTEDTLQQNTLWPEQHKLYGHGYEVYAVTANPTGNVLATACKSSHV-----EHSVVMLW 593
Query: 391 ITVNAARRYRLAGESRRFT 335
T N +++ + G T
Sbjct: 594 STSNWSKKSEIIGHQLTVT 612
>AC006833-9|AAF60943.1| 318|Caenorhabditis elegans Saposin-like
protein family protein7 protein.
Length = 318
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = -1
Query: 544 ATSMYPMNEKSRLELSVYSVRENTTANVKARACNTTMVL*YDTTTPMVYAWITVNAARR 368
AT++YP E +EL + R TT T TTT + ++ RR
Sbjct: 136 ATTLYPEEEAEEIELPTTTTRRRTTTTTTTTTPPPTTTTTVRTTTALTRPNPSIEQVRR 194
>Z92780-6|CAI46551.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 347 RFTRQSVSPGCIYCYPSVHHRRCRVILQHHGGVASSGF 460
RFT + P C CY + +RC + G+ + F
Sbjct: 570 RFTSKDEKPYCANCYGDLFAKRCNACTKPITGIGGAKF 607
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 114 DDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEP 254
+DFA N + N ER+I + R + LLT ++ + I F +P
Sbjct: 155 EDFASSNGICNKERKIFETWARPFFDLLTGSVINKILINERFEQNDP 201
>Z81068-14|CAJ30229.1| 691|Caenorhabditis elegans Hypothetical
protein F25H5.1f protein.
Length = 691
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 347 RFTRQSVSPGCIYCYPSVHHRRCRVILQHHGGVASSGF 460
RFT + P C CY + +RC + G+ + F
Sbjct: 570 RFTSKDEKPYCANCYGDLFAKRCNACTKPITGIGGAKF 607
>Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical
protein K01A11.4 protein.
Length = 854
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 285 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTM-VVLQALAL 461
+M+ AF+ + GT + + + R + +YL+ I TIG ++ +++ V +QAL +
Sbjct: 341 VMLHAFMPTKGTTMCVPLARFIAHITMYLVFLIAAILRPTIGFYFAWTDSIEVTVQALEI 400
Query: 462 -TFAVVFSLTL 491
+A V L L
Sbjct: 401 FMYAYVMGLAL 411
>L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin family
protein 2 protein.
Length = 234
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 183 VYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMGTLIALIVKRRDSPAN 362
+YGL + +SI + + + + T +++I FI+ +G IAL KR +
Sbjct: 74 IYGLCIIA--GPLSIIGLIGAISQKKPVLATCLVLIVIFFIMELGGSIALWSKRGSLRSL 131
Query: 363 LYLLA--AFTVIQAYTIGVVVSYYN 431
LY A + + I ++ + YN
Sbjct: 132 LYRFANDIYLTNSVFDISIIQNTYN 156
>EF443133-1|ABO31113.1| 656|Caenorhabditis elegans LIM-9 isoform
protein.
Length = 656
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 347 RFTRQSVSPGCIYCYPSVHHRRCRVILQHHGGVASSGF 460
RFT + P C CY + +RC + G+ + F
Sbjct: 570 RFTSKDEKPYCANCYGDLFAKRCNACTKPITGIGGAKF 607
>AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel
protein protein.
Length = 854
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 285 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTM-VVLQALAL 461
+M+ AF+ + GT + + + R + +YL+ I TIG ++ +++ V +QAL +
Sbjct: 341 VMLHAFMPTKGTTMCVPLARFIAHITMYLVFLIAAILRPTIGFYFAWTDSIEVTVQALEI 400
Query: 462 -TFAVVFSLTL 491
+A V L L
Sbjct: 401 FMYAYVMGLAL 411
>AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 854
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 285 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTM-VVLQALAL 461
+M+ AF+ + GT + + + R + +YL+ I TIG ++ +++ V +QAL +
Sbjct: 341 VMLHAFMPTKGTTMCVPLARFIAHITMYLVFLIAAILRPTIGFYFAWTDSIEVTVQALEI 400
Query: 462 -TFAVVFSLTL 491
+A V L L
Sbjct: 401 FMYAYVMGLAL 411
>AC006677-10|AAF39946.1| 330|Caenorhabditis elegans Serpentine
receptor, class j protein18 protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.8
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 7/136 (5%)
Frame = +3
Query: 108 VEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWM 287
V+ F+ R+N +R AFI YG+L + + ++ FV +
Sbjct: 77 VDSVFSERSNFAPTLISLRCAFIAGTYGILNIHFIFRYNVLKNTSFVSHYFMPYGLILSI 136
Query: 288 MIIAFILSMGTLIALIVKRRDSPANLYLLAAFTV---IQAYTIGVVVSYYNTMVVLQAL- 455
++ F + + T + + Y+ AF + TI ++ ++ +V +A
Sbjct: 137 FLVIFHIGLWTFVVEPTMYSSDESRNYVRQAFQEEYGVDVNTISTKIAEASSGIVFRAWI 196
Query: 456 ---ALTFAVVFSLTLY 494
+T +S+TLY
Sbjct: 197 GTGVVTVIASYSMTLY 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,939
Number of Sequences: 27780
Number of extensions: 341619
Number of successful extensions: 851
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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