Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7c12
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 52 3e-07
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 51 6e-07
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 51 8e-07
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 48 8e-06
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 2.1
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 29 2.8
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 29 3.7
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 4.9
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/65 (32%), Positives = 41/65 (63%)
Frame = +3
Query: 402 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIF 581
+ A+ G+G+F +LA G+ SE M+++ +SF+ S Q + +L+ Q + + S++F
Sbjct: 35 DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAEWELSAQAESLITSVVF 94
Query: 582 IGMMV 596
+GM+V
Sbjct: 95 VGMLV 99
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/63 (31%), Positives = 42/63 (66%)
Frame = +3
Query: 408 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIFIG 587
A+ +G+GR+ ++L+ G+ +E M+++ +SF+ PS Q + LT+ + + SI+F+G
Sbjct: 15 ALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITSIVFVG 74
Query: 588 MMV 596
M++
Sbjct: 75 MLI 77
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/72 (27%), Positives = 44/72 (61%)
Frame = +3
Query: 381 NSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKG 560
N E + A+E G+G+F ++LA G+ E M+++ +SF+ P + + +++ + +
Sbjct: 195 NMETYTTDEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPLVREEWNISAENES 254
Query: 561 WLNSIIFIGMMV 596
L+S++F GM++
Sbjct: 255 LLSSVVFAGMLI 266
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/79 (26%), Positives = 46/79 (58%)
Frame = +3
Query: 360 SDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLD 539
++ E+ E + A+ G+GRF ++LA + +E M+V+ +SF+ PS + +
Sbjct: 6 AEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAEWG 65
Query: 540 LTTQTKGWLNSIIFIGMMV 596
++ +G ++S++F GM++
Sbjct: 66 VSGAAEGLVSSVVFAGMLI 84
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 439 TTCCWQYAVSSALPRRWTSSRCRSSYPRHSA 531
T CCW + AL R WT R RS H A
Sbjct: 538 TPCCWYFLWLVALNRCWTVYRLRSRGISHPA 568
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 461 RSRQHFRGDGRHLDVVHPTLGTVRLRPHHSD*RMA---KQYNLHR 586
RS H + D H T+GT R+ PHHS R+A +Y HR
Sbjct: 826 RSYAHVQVDSPGTATRH-TVGTTRITPHHSRDRLATVRDEYPTHR 869
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 101 LTNNKEEAHQIVTGKLYAVGS-ATPPSERRLSVPATTIQSR 220
LT+NKE + IVT + AVGS P + L P + + R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 385 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 299
E+ P SGS F+FLTE T S PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,679,085
Number of Sequences: 37544
Number of extensions: 451098
Number of successful extensions: 1280
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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