Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7c08
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0602 + 19183549-19184919                                         29   4.3  
10_01_0051 - 741031-741820,742998-743530,743616-743833,743941-74...    27   9.9  

>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 144 VKISKMQHFDFFRNYKCRHK 85
           + +  MQHFDF  NY   HK
Sbjct: 295 INVDGMQHFDFDTNYDAEHK 314


>10_01_0051 -
           741031-741820,742998-743530,743616-743833,743941-744043,
           744239-744318,744719-744725
          Length = 576

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 140 FTQSLCCSAVVERVIYLLVA*LQNS 214
           FTQ LC SAVV+ ++  L + LQ S
Sbjct: 67  FTQCLCFSAVVKNLVRYLTSVLQES 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,791,485
Number of Sequences: 37544
Number of extensions: 137184
Number of successful extensions: 263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)