Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7c08
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58727-3|AAB00583.1|  131|Caenorhabditis elegans Hypothetical pr...    33   0.13 
U40952-13|AAA81746.1|  237|Caenorhabditis elegans Lamp (lysosome...    29   2.2  
AF186848-1|AAD56712.1|  237|Caenorhabditis elegans LMP-1 protein...    29   2.2  

>U58727-3|AAB00583.1|  131|Caenorhabditis elegans Hypothetical
           protein D1005.6 protein.
          Length = 131

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 153 NDCVKISKMQHFDFFRNYKCRHK 85
           N C+K  KMQ+F FF N+KC  K
Sbjct: 71  NFCIKKKKMQNFQFFFNFKCFEK 93


>U40952-13|AAA81746.1|  237|Caenorhabditis elegans Lamp
           (lysosome-associated membraneprotein) homolog protein 1
           protein.
          Length = 237

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 541 TDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFN 651
           T++ T +TCI+L    QFN+ + + +    F  V FN
Sbjct: 25  TNNNTGLTCIILDGDFQFNLVFNEKNTTEKFT-VTFN 60


>AF186848-1|AAD56712.1|  237|Caenorhabditis elegans LMP-1 protein
           protein.
          Length = 237

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 541 TDSETNITCIVLKFAAQFNVTYTKVDNVSSFAHVVFN 651
           T++ T +TCI+L    QFN+ + + +    F  V FN
Sbjct: 25  TNNNTGLTCIILDGDFQFNLVFNEKNTTEKFT-VTFN 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,938,519
Number of Sequences: 27780
Number of extensions: 136511
Number of successful extensions: 284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)