Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7c06
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0168 + 15932050-15932805                                         32   0.33 
08_02_1168 + 24853895-24854216,24854264-24854286,24856102-248561...    27   9.5  

>02_03_0168 + 15932050-15932805
          Length = 251

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
 Frame = +3

Query: 258 EVTYINRLTEMKRKRLKVITVRPEDGQELDVNDLIER---HHTSHKTLELGVVLAK---- 416
           EV  + R T    K++   T RPEDG EL  ++++E+     T  K  +L V  +     
Sbjct: 141 EVANVIRGTNEHGKQMDGYTARPEDGDELSSSEVLEQTESRETIFKVWDLDVPFSDEDEL 200

Query: 417 QVIKNEKVRELLQDNQE 467
           ++IK+  +++LL+DN +
Sbjct: 201 ELIKD--LKKLLKDNPQ 215


>08_02_1168 +
           24853895-24854216,24854264-24854286,24856102-24856181,
           24856286-24856369,24856843-24857074
          Length = 246

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 368 TPH*PQDPRAGSGSGQTSYQERKGTRAASRQP 463
           +PH P  PR+G G G+   Q R G R A R P
Sbjct: 29  SPHLPFLPRSGRGEGR---QRRCGRREARRPP 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,745
Number of Sequences: 37544
Number of extensions: 335320
Number of successful extensions: 968
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)