Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7c03
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical ...   247   4e-66
Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U58758-12|AAB93432.1|  392|Caenorhabditis elegans Hypothetical p...    27   8.4  
U41995-7|AAP68946.1|  405|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical
           protein C04C3.3 protein.
          Length = 352

 Score =  247 bits (605), Expect = 4e-66
 Identities = 112/157 (71%), Positives = 132/157 (84%)
 Frame = +2

Query: 164 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 343
           A +   A+  +TVRDALNQA+DEE++RD++VF++GEEVAQYDGAYK+++GLWKK+GDKRV
Sbjct: 15  AGTSTRAASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRV 74

Query: 344 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 523
           +DTPITE              L+PICEFMTFNFSMQAID IINSAAKT+YMSAG VPVPI
Sbjct: 75  VDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPI 134

Query: 524 VFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYS 634
           VFRGPNGAA+GVAAQHSQ F AWY+HCPGLKV+ PYS
Sbjct: 135 VFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYS 171


>Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical
           protein F27D4.5 protein.
          Length = 366

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 1/151 (0%)
 Frame = +2

Query: 179 LASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPI 358
           L    + +  ++N+A+   ME D+   + GE+VA + G ++ +  L KK+G  RV +TP+
Sbjct: 40  LEKTKMNLMQSVNEAMRIAMETDDSAVLFGEDVA-FGGVFRCSLDLQKKFGKDRVFNTPL 98

Query: 359 TEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPV-PIVFRG 535
            E                 I E    ++   A D ++N AAK  Y S        +  R 
Sbjct: 99  CEQGIAGFGIGVAAAGATAIAEIQFGDYIFPAYDQLVNEAAKFRYRSGNQFDCGKLTVRT 158

Query: 536 PNGAASGVAAQHSQCFGAWYSHCPGLKVLMP 628
             GA    A  HSQ   A ++H PGLK+++P
Sbjct: 159 TWGAVGHGALYHSQSPEANFTHTPGLKLVVP 189


>Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical
           protein AH10.3 protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 110 KSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKV 256
           K S +++  L  L  R+ ATS    ++P T  D L++   EEM+R E +
Sbjct: 22  KRSSSLIASL--LGSRNGATSSKTINEPTTTEDELDEESMEEMKRRELI 68


>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical
           protein K09H11.3 protein.
          Length = 1085

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = -2

Query: 459 SIACIEKLKVMNSQIGLSPAKAAPTAIPANPASVMGVSITLLSPYFFHRPLVTL*APSY* 280
           S+     L    S+  LS +KA  + +   P+ V   S +L+SP   H  +    APS  
Sbjct: 718 SVTRTPSLSRRRSRAHLSYSKATESPLD-KPSEVRRESSSLMSPLLKHVTMTNNSAPSQV 776

Query: 279 ATSSPK 262
            TSSP+
Sbjct: 777 ITSSPR 782


>U58758-12|AAB93432.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK1127.10 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 402 AKAAPTAIPANPASVMGVSITLLSPYFFHRPL 307
           A    TA  ANP  V+ V  T +SPY F RP+
Sbjct: 160 AAVVQTAKKANPEIVVVVDNTFMSPY-FQRPI 190


>U41995-7|AAP68946.1|  405|Caenorhabditis elegans Hypothetical
           protein E02C12.8c protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 540 MELPPVLPHNIPSALVPGTATVQALK 617
           M L PV+P +I SA++P    V ALK
Sbjct: 350 MMLLPVMPSSIQSAIIPEEDKVSALK 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,420,467
Number of Sequences: 27780
Number of extensions: 293173
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)