Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7b22
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    71   2e-13
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.4  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    27   2.4  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   5.6  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   5.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   5.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   5.6  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   7.4  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   9.8  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   9.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   9.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   9.8  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   9.8  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 34/74 (45%), Positives = 47/74 (63%)
 Frame = +1

Query: 304 NASTQQKSPNIVLIIADDLGWDDVSFHGSDQILTPNIDLLAYSGKALGRYYTHCICTPSR 483
           N   + K PN ++I+ADDLGW DVS  GS +I TPNI+ LA  G  L  ++T   C+P+R
Sbjct: 4   NKQAESKKPNFLVIVADDLGWSDVSPFGS-EIHTPNIERLAKEGVRLTNFHTASACSPTR 62

Query: 484 AALLTGKYAHRIGM 525
           + LL+G   H  G+
Sbjct: 63  SMLLSGTDNHIAGL 76


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 289 VSRIEWCYTFRTTATYIYFYFPNK 218
           VS I +C+T   T   +Y+Y+ N+
Sbjct: 849 VSSISFCFTHAVTEKVLYYYYGNE 872


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 511 VHIFRSRELPSMVYKYSEYSSVPRPFQSMPKDRCSESIFGLI 386
           VHIFR +E+ S + +     S P P +S+ + R S S+ G +
Sbjct: 257 VHIFRLKEVYSNLERQGLLPSSPPPKESLLR-RSSRSLIGTV 297


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 238 YFYFPNKSYDQITTYKIEILQKKSRSLNTLFSPFHFTF 125
           YF  PN SY  + TY    L     SL  L+SP   T+
Sbjct: 75  YFLKPNVSYSDLATYS---LAAYPYSLKVLWSPIVDTY 109


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 4   CWLLLWSHVIY--IYRATFYYFFLNITGF 84
           CW+ LWS + +  I  A   YF  +IT F
Sbjct: 125 CWICLWSMIFHFIIAIANGVYFVKHITKF 153


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 385 GSDQILTPNIDLLAYSGKALGRYYTHCI 468
           G D     N++ + YSGK L +Y   C+
Sbjct: 400 GEDFSANSNLNSMYYSGKVLAKYAMLCV 427


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 387 SMKTYVVPSQIIGNDKNYIRRFLLSRSVNYPI 292
           ++ T   P+  +GND+ Y +R  L+    +P+
Sbjct: 495 AIPTEQAPTDFLGNDQAYAQRLFLASIKRWPV 526


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 298 SNSVSRIEWCYTFRTTATYIYFYFPNK--SYDQITTYKIEILQKKSRSLNTLFSPF 137
           S+  +  E C+T R TAT+ Y  F +   S+ +        ++++S++ + LF+ F
Sbjct: 412 SSHATNTEQCFTKRLTATFGYSLFSSSFLSHTKNPDVASFYVKERSKAHHFLFNTF 467


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +1

Query: 274 ILFLILNWIVNASTQQKSPNIVLIIADDLGWDDV------SFHGSDQILTP 408
           ++ LIL W V+  + +++ +  L + DD G  D       ++H    I+TP
Sbjct: 8   LITLILPWFVSGDSSEEAVDAPLDVKDDTGNKDYYKDSTGAYHFDKLIVTP 58


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 496 SRELPSMVYKYSEYSSVPRPFQSMPKDRCSESIFGL 389
           SR L  ++  Y+EY++   PF+ +P     +S   L
Sbjct: 111 SRNLLELINDYAEYTTQVLPFRKIPSSDNLDSSLNL 146


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 292 SVSRIEWCYTFRTTATYIYFYFPNKSYDQITTYKIEILQK 173
           S+S   WC  +R  A  + F      +DQI  Y + +L K
Sbjct: 844 SISAKIWCDHYRLLAVKVLFTQDQAWFDQIENYPL-VLSK 882


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 256 TTATYIYFYFPNKSYDQITTYKI 188
           TT ++I  Y+P+ S+   + YK+
Sbjct: 292 TTNSFIALYYPDNSHGSFSIYKL 314


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 232 KSKYK*Q*YEMYNTILFLILNWIVNASTQQKSPN 333
           K KYK     +Y +I+FL LN++V+     K+ N
Sbjct: 24  KEKYKIIHRLLYISIIFLFLNYVVDIVCYVKNYN 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,245
Number of Sequences: 5004
Number of extensions: 46402
Number of successful extensions: 119
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)