Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7b22
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    29   2.5  
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139...    29   2.5  
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419...    29   3.3  
04_03_0149 + 11873854-11874135,11874938-11875033                       29   3.3  
12_02_1258 - 27376626-27376850,27376936-27377069,27377424-273776...    27   10.0 
05_01_0245 - 1829921-1830359,1830449-1831002,1832016-1832144,183...    27   10.0 

>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 328 EIFVESKR*LSNSVSRIEWCYTFRTTATYIYFYFPNKSYD 209
           EI V S+    N V  I WC+  RT    +Y  FPN+S D
Sbjct: 426 EIKVISRLRHRNLVQLIGWCHG-RTELLLVYELFPNRSLD 464


>08_01_0169 -
           1396657-1396710,1396801-1396843,1397440-1397904,
           1397999-1399395
          Length = 652

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 328 EIFVESKR*LSNSVSRIEWCYTFRTTATYIYFYFPNKSYD 209
           EI V S+    N V  I WC+  RT    +Y  FPN+S D
Sbjct: 413 EIKVISRLRHRNLVQLIGWCHG-RTELLLVYELFPNRSLD 451


>08_01_0475 -
           4185534-4186047,4187437-4187708,4188032-4188979,
           4190096-4190387,4190486-4191357,4192298-4192354,
           4192391-4192504,4192966-4193595
          Length = 1232

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 313 TQQKSPNIVLIIADDLGWDDVSFHGSDQILTPNIDLLA 426
           T Q+SPN   I+ D +  DD+   G++     ++DL A
Sbjct: 7   TGQQSPNATSIVTDLMDLDDIIVEGNEVQFAMDVDLRA 44


>04_03_0149 + 11873854-11874135,11874938-11875033
          Length = 125

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 537 GVSLHSDSMCIFSGQESCPRWCTNTVSIVAS 445
           GV L  + +C+  G+ SCP    N +S++AS
Sbjct: 68  GVYLIREGVCLIHGKLSCPGPIPNGISLIAS 98


>12_02_1258 -
           27376626-27376850,27376936-27377069,27377424-27377678,
           27377804-27378136,27378322-27378413,27378519-27378629,
           27378815-27378886,27379000-27379071,27379141-27379212,
           27379322-27379393,27379505-27379576,27379786-27379921,
           27380044-27380092
          Length = 564

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +1

Query: 298 IVNASTQQKSPNIVLIIAD--DLGWDDVSFHGS---DQILTPNIDLLAYSGKALGRYYTH 462
           +VN     + P   L+I D  +LG  D   HG    DQ L  N  +    G A G  Y H
Sbjct: 330 LVNLRGYCRLPTAKLLIYDFLELGSLDCYLHGDAQDDQPLNWNARMKIALGSARGLAYLH 389

Query: 463 CICTP 477
             C+P
Sbjct: 390 HDCSP 394


>05_01_0245 -
           1829921-1830359,1830449-1831002,1832016-1832144,
           1832249-1832339,1832646-1832758,1832836-1833079,
           1833193-1833281,1833357-1833424,1833790-1833874,
           1834038-1834190
          Length = 654

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 522 SDSMCIFSGQESCPRWCTNTVSIVASQ 442
           S    +F G+E CP W   ++++V+++
Sbjct: 583 SHGRLLFGGEEECPDWMVRSLAMVSTK 609


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,605,167
Number of Sequences: 37544
Number of extensions: 251738
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)