Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7b16
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    26   3.6  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    26   4.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.7  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   6.2  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    25   6.2  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   8.3  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   8.3  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.3  

>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 344 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 225
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVKKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 344 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 225
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVRKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 144 AKMRKQIHTIVLPTVVVIFLLICVYVYIKTRP 239
           +K+ K +  +      + FLLIC++ YI++ P
Sbjct: 476 SKIVKPVSVVKRVAFNIPFLLICIFFYIQSSP 507


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 120 KRERKQEFAKMRKQIHTIVLPTVVVIFLLIC 212
           KRE  ++F+K+ K+I  I   T V   +++C
Sbjct: 639 KREFHKDFSKLYKEILDIFNSTTVNFLMILC 669


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 93  GPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVY 218
           GP  ETA    ER+QEF  +   I++++   + V+ + +  +
Sbjct: 62  GPT-ETANPNVERRQEFKDLHPNIYSLLRLLIAVLAVSVVFF 102


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +3

Query: 45  LFIFADLLALKMRKLKGPVKETARQKRERKQEFAKMRK-----QIHTIVLPTVVVIFLLI 209
           +FI  D++AL ++   G V   A    + + + +++       Q+ TIV+ +++     I
Sbjct: 116 IFITFDIIALILQAAGGGVAGGADSGSQLQTQGSQIMLGGICFQLFTIVVFSILFSIFFI 175

Query: 210 CVYVYIKTRPST 245
            +Y +   RPST
Sbjct: 176 ALYTHHPIRPST 187


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 428 HLDMLGKTWNVSVINIV*TYSTKSLTCYHIESQSQ 324
           H D++   W  S+     T  TK LTC +I S+ +
Sbjct: 221 HSDVMHPKWVHSLFEGTLTSETKCLTCENITSRDE 255


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 134 TRIRENAKTNS--YDCVTNCRCNIF 202
           T +  +A TNS  YDC+ N  CN F
Sbjct: 119 TPVECSASTNSHSYDCLWNFSCNSF 143


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 225 YTRTHKLIKILQRQLVTQSYEFVFAFS 145
           + +T  L  ILQ  +VT  ++ V+AFS
Sbjct: 688 FIKTQGLNSILQLDIVTHPFKSVYAFS 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,164
Number of Sequences: 5004
Number of extensions: 39772
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)