Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7b08
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 28 1.4
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 1.9
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 27 1.9
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 2.5
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 27 2.5
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 4.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.3
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 26 4.3
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 5.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 7.5
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 25 7.5
SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy... 25 9.9
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 25 9.9
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 161 HMILGEGYVRLLL-EANHDVTYLTPAPLKIGHPKLRQIDVSSTEKGFDFD 307
H I+G+ ++ + E +H V LT K P+ R+IDV G+D +
Sbjct: 301 HQIMGDTDIQSIKNEGDHLVVQLTSQMDKSKKPETRKIDVLYVATGYDHE 350
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.5 bits (58), Expect = 1.9
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Frame = +2
Query: 104 LVTCSAYKLLAVFPFPGKSHMILGEGYVRLLLEANHDVTYLT-PAPLKIGHPK-LRQIDV 277
LVT K+ VFP PG + + L + + + + P PL+ G + R++ V
Sbjct: 144 LVTADQAKMSGVFPLPGAPRAAVTDPEKLLEFARSAEGSIIAPPPPLQPGASRQARRLVV 203
Query: 278 SSTEKGFDFDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFD 457
+ F D +F +++ +S T HK + + ++ N L + T + D
Sbjct: 204 TGIPNEFVEDAFVSF----IEDLFISTTYHKPETKHFSSVNVCKEENFAILEVATPE--D 257
Query: 458 AVIVEWMYSDLYS 496
A + + S+ YS
Sbjct: 258 ATFLWGLQSESYS 270
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = +2
Query: 329 LINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFDAVIVEWMYSDLYS-GF- 502
L+N + LS TN ++ + V ESL N LL V+ D + F
Sbjct: 141 LLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLL----YLSGVVYRKRKQDSKAIDFL 196
Query: 503 -STVFNCPFIWSSSLE 547
S V PF WS+ LE
Sbjct: 197 KSCVLKAPFFWSAWLE 212
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 419 RWDALTMTRLHIALRYTCDSYLIDRLL 339
RW T RLH LR+ +++L+D LL
Sbjct: 239 RWRQKTRERLHQKLRFQKNAFLLDVLL 265
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 631 GEVLRMKYD-QESKLDSVRINKPKDHGMGLQR*R--PNKWTV 515
G ++ +D QES+L S KP DHG G R N WTV
Sbjct: 258 GSFMKFGFDPQESQLHSGM--KPNDHGFGTDRFELYGNLWTV 297
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -2
Query: 402 NDSVTYCITIYL*FVSDRSTSL----LINFLKLNRPSKSKPFSVEDTSI 268
NDS+ +CI +L ++ + SL L+ F + P K K S++D S+
Sbjct: 501 NDSLHHCIFPWLPYLEKHADSLLQSVLVQFSLILSPWKIKNGSIDDFSV 549
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = +2
Query: 323 KKLINKEV---DLSDTNHKYIVMQYVTESLLM 409
K+L NKE +LSD + KYI +Q + E+LL+
Sbjct: 1131 KELENKEEKCQNLSDASLKYIELQEIHENLLL 1162
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 482 YTSTQQSRHQTFDLYPKA 429
Y +Q +RH FD++PK+
Sbjct: 181 YAGSQLNRHSVFDIFPKS 198
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 580 LPNPAYFPDHTSSLEPPLHISRAWLNNYG 666
LPNPA P S +PPL S + N +G
Sbjct: 87 LPNPALTPVRNMSNKPPLTWSPSSANLFG 115
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 7.5
Identities = 22/84 (26%), Positives = 33/84 (39%)
Frame = +2
Query: 299 DFDGLFNFKKLINKEVDLSDTNHKYIVMQYVTESLLMHPNVQKLLLDTDQTFDAVIVEWM 478
D + L + + N+E + T K + +T S L L+TD+ D +
Sbjct: 189 DKESLTDLRFFSNEEAESKVTRVKSSCL--LTLSFLFKQTADLENLETDKKIDK---QTF 243
Query: 479 YSDLYSGFSTVFNCPFIWSSSLEP 550
S LY ST+F WS P
Sbjct: 244 KSSLYENLSTLFKSDEFWSLVSSP 267
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 437 DTDQTFDAVIVEWMYSDLYSGFSTVFNCP-FIWSS 538
+ + DAV V W+ S ++ F V N P +W+S
Sbjct: 75 EVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNS 109
>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 152
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 434 LDTDQTFDAVIVEWMYSDLYSGFS 505
L D+T+ +I+ W Y+ Y+G +
Sbjct: 118 LTYDETYKKLIMSWYYAGYYTGLA 141
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 461 VIVEWMYSDLYSGFSTVFNCP-FIWSS 538
V V W+ S ++ F+TV N P +W+S
Sbjct: 83 VDVLWVNSGIFHSFNTVLNTPDDVWNS 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,898
Number of Sequences: 5004
Number of extensions: 55636
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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