Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7b01
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    32   0.27 
Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    31   0.47 
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    27   5.8  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    27   5.8  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    27   5.8  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      27   5.8  

>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -2

Query: 303 GSIRNTSGNVDVHDELHK 250
           G++RN++GNVDVH  LHK
Sbjct: 269 GNLRNSNGNVDVHPLLHK 286


>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 330 NNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSH 184
           +NG   + SGS+RN   N +  +   K RG  GN++   N +  H  +H
Sbjct: 545 SNGQKKETSGSVRNEGSNNNSQNRNTKYRGAVGNNQHMYNGNEGHSGAH 593


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 258 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 169
           LH+  G  G S S++N +  H + HY  +S
Sbjct: 360 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 389


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 258 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 169
           LH+  G  G S S++N +  H + HY  +S
Sbjct: 456 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 485


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 258 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 169
           LH+  G  G S S++N +  H + HY  +S
Sbjct: 428 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 457


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 258 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 169
           LH+  G  G S S++N +  H + HY  +S
Sbjct: 360 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,790,084
Number of Sequences: 27780
Number of extensions: 73646
Number of successful extensions: 364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)