Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7a21
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    41   1e-04
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    33   0.035
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    28   1.3  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.0  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    26   5.3  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   7.1  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   9.3  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
 Frame = +2

Query: 311 NPPVLLCHGKLDASSGFRPLV---SLLPDSFYYVAIDLPGNGRSDHLPPGVRYTVIDLVP 481
           +PPVL+ HG L +   +R L    S   D   Y AID   +G S  + P + Y+ + L  
Sbjct: 20  HPPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIY-AIDQRCHGDSPCVAP-LSYSAMAL-D 76

Query: 482 AVIKVREHFKWDKFIYIGHSLGVPIGKFFNIAHPGYVTRMVEVDPVPAHHTWP 640
           A   +++H K DK   IGHS+G        +  P  V ++V VD  P +   P
Sbjct: 77  AFQFMKDH-KLDKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNSPWYQDLP 128


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
 Frame = +2

Query: 275 GNIRG-LTWGNPSNPPVLLCHGKLDASSGFRPLVS-LLPDS---FYYVAIDLPGNGRSDH 439
           G I G LT   P    ++L HG   ++  F P+   LL +S     ++A+DL  +G +  
Sbjct: 56  GTINGYLTLPQPDGCLLVLQHGAGSSAMSFAPVTQELLSNSDNKVGFLALDLRAHGETTL 115

Query: 440 LPPG---VRYTVIDLVPAVIKVREHFKWD-KFIYIGHSLG 547
            P     +     D   AV  V+  F+ D K I +GHSLG
Sbjct: 116 EPESDMSLETLSKDFTHAVSYVQRMFELDEKIILVGHSLG 155


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 515 DKFIYIGHSLGVPIGKFFNIAHPGYVTRMVEVDPV 619
           +K I +GHS+G  +   + + +P  V +++ V PV
Sbjct: 172 EKMILVGHSMGGYLSAVYAMQYPERVEKLLLVSPV 206


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 437 HLPPGVRYTVIDLVPAVIKVREHFKWDKFIYIGHSLGVPIGKFF 568
           H+P  + Y ++ L+  +     H K     Y   ++  P+G+FF
Sbjct: 58  HIPVQIVYVILTLIGYIFAHISHHKASPENYYKGNIHRPVGRFF 101


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
 Frame = +2

Query: 332 HGKLDASSGFRPLVSLLPDSFYYVAIDLPGNGRSDHLPPGVRYTVID------LVPAVIK 493
           HG     S F+ ++S  P +    + D  G G S    P  R   +D      L     K
Sbjct: 106 HGLGGQMSQFQKVMSYFPPTACLFSFDYWGCGLSRQAFPNQRIGSVDQLTTKGLSKLTYK 165

Query: 494 VREHF--KWDKFIYIGHSLGVPI 556
           V E    +  +FI IGHS+G  I
Sbjct: 166 VLEKLFPENTQFILIGHSMGATI 188


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 338 KLDASSGFRPLVSLLPD---SFYYVAIDLPGNGRSDHLPPGVRYTVIDLV 478
           +LD +   +   +L  D   SF ++ +D+     S  +PPG+R+  ++++
Sbjct: 271 ELDTAESEKKSAALAKDNNQSFRFLELDVTEKFLSSAMPPGLRFPAVNIL 320


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 272 WGNIRGLTWGN 304
           WG+++ +TWGN
Sbjct: 213 WGSLKNITWGN 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,398
Number of Sequences: 5004
Number of extensions: 59822
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)