Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7a16
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo... 41 2e-04
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 29 0.55
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 29 0.73
SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe... 29 0.73
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 0.97
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 6.8
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.0
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.0
>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 40.7 bits (91), Expect = 2e-04
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Frame = +2
Query: 38 MAVCVAVIGKDNSPLY---IGGIGN--DTSSDNELSRQWLVHTALDALEERLTTANPNNS 202
M A+IG ++P+Y +G I D S ++ L+ Q++VH++LD +++ T+N
Sbjct: 1 MTAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLN-QFIVHSSLDIVDQLQWTSNA--- 56
Query: 203 GTNTTTARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTA 382
Y+ + I YVT + ++ +L+ + S ++
Sbjct: 57 -------------FYMKTIDQFHEMYISAYVTPSNMRFMLLHQNQSADN-------IKLF 96
Query: 383 LRRLHALYADAICNPFHLPGDQITSPKFDKQVKNI 487
+ LH LY + +PF+ P I S FD +V++I
Sbjct: 97 FQELHELYIKTLMSPFYQPNQPIRSQAFDLKVRSI 131
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 29.1 bits (62), Expect = 0.55
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 77 PLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGT 208
P Y + ++ S D R W+ L+ EE+ A P S T
Sbjct: 526 PAYFVNLADEPSQDRSEGRYWVTGRTLEQAEEKAKAAFPGKSFT 569
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 28.7 bits (61), Expect = 0.73
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 122 ELSRQWLVHTALDALEERLTTANPNNSGTNTTTARTDLRDL 244
+ SR W ++ LEE+L T P +T A LRDL
Sbjct: 390 DFSRPWRRINMIEYLEEKLNTKFPPGDQLHTPEANAFLRDL 430
>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 28.7 bits (61), Expect = 0.73
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +2
Query: 44 VCVAVIGKDNSPLYIGGIGNDTSSDNELSR-QWLVHTALDALEERLTTANPNNSGTNTTT 220
V +++ G + LY+ I D + L+R Q+L +LD + + + N G T+
Sbjct: 7 VFLSIAGPKDEQLYLEII--DPKEKHLLARYQYLGELSLDVINDLV------NDGERTSN 58
Query: 221 ARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSS 334
D +LGLL + Y + +NT++K +L +
Sbjct: 59 ------DCFLGLLGVEEDISTYAFYSNTKVKFILAVKA 90
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 401 LYADAICNP--FHLPGDQITSPKFDKQVKNIMLNNV*TLK 514
+YA+ + P FH S KFDK K + +N+V T K
Sbjct: 229 VYAEDVIEPKTFHYKNGISISMKFDKDQKKLFINDVSTTK 268
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 6.8
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +2
Query: 278 KIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYADAICNPFH-LPGDQIT 454
+IY T ++ ++ S +P S + ++ H L +D + + +P D I
Sbjct: 223 QIYPKQNMTNLEDIMSLSLLTPVSSKTDENANSSSAFLFHVLASDCFSSIENCIPPDLII 282
Query: 455 SPKFDKQVK---NIMLNNV*TLKKIKLFKVAKHCLYL 556
F ++ ++++ L IK+F +A +CL+L
Sbjct: 283 DKVFSSSLQLSEEACISSLLNLGMIKVFSLAGNCLHL 319
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 155 LDALEERLTTANPNNSGTNT 214
L+ L +RL+T NPNN+ +T
Sbjct: 67 LNQLCKRLSTGNPNNTNAST 86
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 392 LHALYADAICNPFHLPGDQITSPKFDKQVKNIMLNNV*TLKKIKLFKVAKHCL 550
LH LY D + +P+HL D SP + K L + L ++ F V++ L
Sbjct: 686 LHYLYTDTLLSPWHL--DSRFSPLKENLSKLANLLELPHLAEVLPFSVSRQPL 736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,974
Number of Sequences: 5004
Number of extensions: 49783
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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