Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7a16
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300...   100   2e-21
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264...    53   2e-07
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333...    30   1.7  
07_03_1234 + 25064187-25064900                                         29   4.0  
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076...    28   5.3  
02_03_0198 + 16251291-16252305,16252728-16252738                       28   7.0  

>09_06_0129 -
           21028528-21028575,21029559-21029654,21029989-21030070,
           21030394-21030472,21030946-21031042,21031506-21031593,
           21033326-21033687
          Length = 283

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 52/143 (36%), Positives = 82/143 (57%)
 Frame = +2

Query: 38  MAVCVAVIGKDNSPLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTT 217
           M +C +V    N+PLY+      T +D+ L    +VH +LD ++ER+     N    N T
Sbjct: 144 MIICESV----NNPLYLQSF---TEADDALKLHHVVHCSLDVIDERVNNPKRNAPALNET 196

Query: 218 TARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLH 397
                    +LGLL+ T+ +K+YGY+TNT++K ++VT+       +++DA+ R   R+ H
Sbjct: 197 ---------FLGLLYPTENYKVYGYLTNTKVKFIMVTTDL-----DVKDADARNFFRKFH 242

Query: 398 ALYADAICNPFHLPGDQITSPKF 466
           A Y DA+ NPFH+PG +I S  F
Sbjct: 243 AAYVDAVSNPFHVPGKKIASRSF 265


>04_04_0426 +
           25125590-25125670,25126171-25126256,25126423-25126471,
           25126547-25126675,25126973-25127055,25127791-25127959,
           25128038-25128103
          Length = 220

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
 Frame = +2

Query: 47  CVAVIGKDNSPLYIGGIGN-DTSSDNELSRQWLVHTALDALEERLTTANPNNSGTNTTTA 223
           C A++ K++ P+Y   +G+     D     Q+++H ALD +++   + N          +
Sbjct: 6   CFAIVSKNDIPIYEAEVGSAPKKEDLAYQHQFILHAALDVVQDLAWSTN-----AMFLKS 60

Query: 224 RTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHAL 403
                DL + + F    + ++ +   T  + +L+  S S  G       +++  + +H L
Sbjct: 61  VDRFNDLVVSVYFYLYNNIVF-FNLMTHARFMLLHDSRSEDG-------IKSFFQEVHEL 112

Query: 404 YADAICNPFHLPGDQITSPKFDKQVK 481
           Y     NP +LPG +ITS  FD +V+
Sbjct: 113 YIKIFLNPLYLPGSRITSSHFDTKVR 138


>01_05_0102 -
           18131640-18131655,18132928-18133046,18133186-18133300,
           18134072-18134325
          Length = 167

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 260 FSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTALRRLHALYAD-AICNPFHL 436
           F T+T+K+    + + IKL+L+T        + R  + R  L+ ++ LY +  + NP + 
Sbjct: 106 FKTNTYKLNFLESPSGIKLILIT--------HPRTGDQRDTLKHIYNLYVEYVVKNPLYA 157

Query: 437 PGDQI 451
           PG  I
Sbjct: 158 PGTPI 162


>07_03_1234 + 25064187-25064900
          Length = 237

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 305 EYL*RSRKFYEYLWKTVILNTSPADQFGQWLC 210
           +Y   +  F+ + W T+ L+T P D   +W C
Sbjct: 57  DYFEETVSFFAHPWHTLTLSTIPDDDTNRWSC 88


>04_04_1499 -
           34006999-34007232,34007371-34007440,34007580-34007637,
           34007940-34007979,34008183-34008259,34008366-34008582,
           34008703-34009266
          Length = 419

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 57  LSEKITRRCTLVASATTPAATMSCPGSGSCTR-RWT 161
           +  ++TR C   A+  TP   ++  G+ S TR RWT
Sbjct: 207 MENQLTRNCIGAATPVTPTGNLAGSGAPSKTRIRWT 242


>02_03_0198 + 16251291-16252305,16252728-16252738
          Length = 341

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = +2

Query: 164 LEERLTTANPNNSGTNTTTARTDLRD---LYL-------GLLFSTDTHKIYGYVTNTRIK 313
           L+   TT +P N+   T     DL D    Y        GL+FST T  ++ +   TR  
Sbjct: 80  LQRGTTTTSPRNNNVATFLHAKDLSDDQQFYTTEFTHRDGLVFSTTTTSLHVFNPATRDA 139

Query: 314 LVLVTSSTS 340
           + L TSS S
Sbjct: 140 ITLPTSSRS 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357,293
Number of Sequences: 37544
Number of extensions: 338016
Number of successful extensions: 965
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)