Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7a15
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    27   2.7  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   4.8  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   4.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   8.3  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   8.3  

>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 478 GYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLVIILNHS 630
           GY     FA++ + +VV+   S+FG    E   ET +      LVI++N++
Sbjct: 427 GYAIASAFAHSSDKIVVVEGDSAFGFSAMEL--ETAIRNQLDLLVIVINNN 475


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 451 PAYKVPPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLV 612
           P  +  PD  Y  V  FAY   +   +   S F ++F++  +ET   PT+ +++
Sbjct: 708 PLEEFSPDTSYSLVNAFAYCDRDKKNVRNCS-FTVIFRDGSEETLCAPTEESMI 760


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 481 YGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLT 591
           + WV TF   +    VLP+++ + +   EA  + G T
Sbjct: 327 FNWVHTFRLRIYGPAVLPMLALYIVNMMEAIGDIGAT 363


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = -2

Query: 710 IAPTAATFR----YPNRRSNGPPKNDNNIPIL*LSIITKVPCVGVKPVSSNASWNTRPKL 543
           + PT+AT      YP+R +  PP + ++ P+  LS  T      VK  +SNAS    P L
Sbjct: 239 LQPTSATSSSSRLYPSRPAPTPPASSSSSPL--LSSQT------VKTTTSNASRQPSP-L 289

Query: 542 LMRGRTTTLFKAYANVMTHP 483
           +    T  + ++++ V+  P
Sbjct: 290 VSSKSTDNIIRSHSPVLLTP 309


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 513 QSIRECDDPSVSSV-WRHLVRRCVRHLGTFTTLQITSLKYTLNKNHCNSTFY 361
           + I + +DP + S+ WR      V  +    T     LKYT    HC  TFY
Sbjct: 773 KKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRN-RMLKYTPEHMHCFGTFY 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,617
Number of Sequences: 5004
Number of extensions: 57583
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)