Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7a15
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387...    28   6.6  
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345...    28   8.7  

>07_03_1019 +
           23337543-23337697,23338315-23338384,23338555-23338740,
           23339006-23339080,23339161-23339240,23339357-23339483,
           23340608-23340667,23341926-23341976,23342048-23342206,
           23342528-23342660,23343097-23343166,23343516-23343570
          Length = 406

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 577 ETGLTPTQGTLVIILNHSIGMLLSFFGGPLLRRFGYRKV-AAVGAILIS 720
           + GL+P+   +V++         + F G L+ RFG+ K+  A G+IL++
Sbjct: 46  DIGLSPSDAAVVMLSGQLADGFATIFVGELIDRFGHFKLWHAGGSILVA 94


>01_01_0469 -
           3456067-3456123,3456414-3456565,3456649-3456779,
           3456846-3458036,3458460-3458541,3458947-3458984,
           3459091-3459250,3459356-3459557,3460245-3460329,
           3460809-3460863,3461230-3461325,3461807-3461940,
           3462031-3462043,3462315-3462419,3462935-3463121
          Length = 895

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 680 PNRRSNGPPKNDNNIPIL*LSIITKVPCVGVKPVSSNAS 564
           P   S+GP   DN +P L  ++++  P  G+K ++S  S
Sbjct: 54  PISHSSGPETVDNVVPPLDCTLLSASPIEGLKKITSACS 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,423,481
Number of Sequences: 37544
Number of extensions: 329459
Number of successful extensions: 695
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)