Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7a15
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78545-2|CAB01766.1| 596|Caenorhabditis elegans Hypothetical pr... 48 5e-06
AF125952-1|AAD14701.1| 571|Caenorhabditis elegans Hypothetical ... 48 7e-06
AC006722-7|AAK68412.2| 544|Caenorhabditis elegans Hypothetical ... 48 7e-06
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 46 2e-05
U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned expre... 46 2e-05
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 46 2e-05
AF026202-6|AAB71245.2| 594|Caenorhabditis elegans Hypothetical ... 42 6e-04
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 40 0.002
Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical pr... 33 0.16
U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical pr... 29 3.4
>Z78545-2|CAB01766.1| 596|Caenorhabditis elegans Hypothetical
protein M03B6.2 protein.
Length = 596
Score = 48.4 bits (110), Expect = 5e-06
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +1
Query: 466 PPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDET-GLTPTQGTLVIILNHSIGML 642
PPDGGYGW I A L N++V +I + G + Q A+ + G++ + + SI
Sbjct: 33 PPDGGYGWAIVAASFLLNMIVDGVIFTVGKILQPAWVHSFGISEASAAMTM----SILSG 88
Query: 643 LSFFGGP----LLRRFGYRKVAAVGAILISAG 726
FF GP L FG R+VA G+++ + G
Sbjct: 89 CYFFAGPIASVLCNVFGCRQVALAGSLIAALG 120
>AF125952-1|AAD14701.1| 571|Caenorhabditis elegans Hypothetical
protein C01B4.9 protein.
Length = 571
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 466 PPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAF-DETGLTPTQGTLVIILNHSIGML 642
PPDGGYGWV+ A L N+ V +I + G + + D+ G T G ++ IL L
Sbjct: 39 PPDGGYGWVVVAASFLVNMAVDGVIYTCGKILVPIWADQFGSTSVAGAVISILT-GCYYL 97
Query: 643 LSFFGGPLLRRFGYRKVAAVGAIL 714
+ FG R VA G+IL
Sbjct: 98 AGPLASSFVNVFGIRSVAIAGSIL 121
>AC006722-7|AAK68412.2| 544|Caenorhabditis elegans Hypothetical
protein Y19D10A.12 protein.
Length = 544
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 466 PPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAF-DETGLTPTQGTLVIILNHSIGML 642
PPDGGYGWV+ A L N+ V +I + G + + D+ G T G ++ IL L
Sbjct: 39 PPDGGYGWVVVAASFLVNMAVDGVIYTCGKILVPIWADQFGSTSVAGAVISILT-GCYYL 97
Query: 643 LSFFGGPLLRRFGYRKVAAVGAIL 714
+ FG R VA G+IL
Sbjct: 98 AGPLASSFVNVFGIRSVAIAGSIL 121
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +1
Query: 469 PDGGYGWVITFAYALNNVVV---LPLISSFGLVFQEAFDET-GLTPTQGTLVIILNHSIG 636
PDGGYGWVI FA ++N+VV S F ++E + E+ GLT G+L+I +G
Sbjct: 70 PDGGYGWVIVFAAFMSNLVVDGISTAFSEFKQSYKERYQESDGLTVFIGSLIIGTYLLVG 129
Query: 637 MLLSFFGGPLLRRFGYRKVAAVGAIL 714
L+S L ++ R V G ++
Sbjct: 130 PLVS----ALCNKYEQRYVVMAGGLI 151
>U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned
expression site protein22, isoform a protein.
Length = 677
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +1
Query: 469 PDGGYGWVITFAYALNNVVV---LPLISSFGLVFQEAFDET-GLTPTQGTLVIILNHSIG 636
PDGGYGWVI FA ++N+VV S F ++E + E+ GLT G+L+I +G
Sbjct: 15 PDGGYGWVIVFAAFMSNLVVDGISTAFSEFKQSYKERYQESDGLTVFIGSLIIGTYLLVG 74
Query: 637 MLLSFFGGPLLRRFGYRKVAAVGAIL 714
L+S L ++ R V G ++
Sbjct: 75 PLVS----ALCNKYEQRYVVMAGGLI 96
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +1
Query: 469 PDGGYGWVITFAYALNNVVV---LPLISSFGLVFQEAFDET-GLTPTQGTLVIILNHSIG 636
PDGGYGWVI FA ++N+VV S F ++E + E+ GLT G+L+I +G
Sbjct: 70 PDGGYGWVIVFAAFMSNLVVDGISTAFSEFKQSYKERYQESDGLTVFIGSLIIGTYLLVG 129
Query: 637 MLLSFFGGPLLRRFGYRKVAAVGAIL 714
L+S L ++ R V G ++
Sbjct: 130 PLVS----ALCNKYEQRYVVMAGGLI 151
>AF026202-6|AAB71245.2| 594|Caenorhabditis elegans Hypothetical
protein C10E2.6 protein.
Length = 594
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +1
Query: 463 VPPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLVIILNHSIGML 642
+PPDGG+GWV+ +V + SFG++ + +E + T L+I L + +
Sbjct: 16 LPPDGGWGWVVVLGSFFVHVFADGFVYSFGVLVETLMEEFHASNTMAALIISLLTGLTLG 75
Query: 643 LSFFGGPLLRRFGYRKVAAVGA 708
+ ++G R GA
Sbjct: 76 SGPLASAVCNKYGCRITTITGA 97
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +1
Query: 463 VPPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLVIILNHSIGML 642
+PPDGG+GWV+ +V + SFG++ ++ E T +L++ + +
Sbjct: 13 LPPDGGWGWVVVIGSFFIHVFADGFVYSFGILAEKLMIEFNSNNTMTSLIVSMLTGFTLG 72
Query: 643 LSFFGGPLLRRFGYRKVAAVGA 708
+ ++G R +GA
Sbjct: 73 AGPLASAVCNKYGCRITTIIGA 94
>Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical
protein C49F8.2 protein.
Length = 771
Score = 33.5 bits (73), Expect = 0.16
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 439 MSNAPAYKVPPDGGYGWVITFAYALNNVVVLPLISSFGLVF---QEAFDETGLTPTQGTL 609
++ P YK DGGYGW++ A L + V FG+VF QE F + G + T
Sbjct: 60 LTERPVYK---DGGYGWLVVLASFLMHAVCDGASFCFGIVFVKIQEHF-QCGRFVSMITA 115
Query: 610 VIILNHSIGMLLSFFGGPLLRRFGYRKVAAVGA 708
+ L S+ +++S G + G R +GA
Sbjct: 116 SMFL--SLPLIMSPVAGIVSDILGCRMSIIIGA 146
>U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical
protein C03B1.13 protein.
Length = 436
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 484 GWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLVIILNHSIGMLLSF---F 654
G ++ +YA ++ SS L+ +E + + T T I+++ +G++L F F
Sbjct: 213 GAIVAASYAFTGDDLIDTFSSNMLIGEEKSSKK-IHQTTDTFTILVSDGLGLVLFFASLF 271
Query: 655 GGPLLRRFGYRKVAAVG 705
G L RFG RK+ VG
Sbjct: 272 GIYLADRFGRRKLVLVG 288
>Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical
protein C14H10.3 protein.
Length = 830
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 228 TCSSRNDKTQNSLNKSSFVLLLTKGVNVC-LKYYFINDDIPNRVLNKMWNYSDFCLMCIL 404
T SS D Q + K + ++ + + V LK+ + DD P+ VL + N++ +C +
Sbjct: 556 TYSSHIDHVQRFVRKLTDIMRIVESTVVSKLKFSELKDDFPSLVLLPIRNWAGIGAVCYI 615
Query: 405 MTLSEE 422
++ +E
Sbjct: 616 PSIVKE 621
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,784,791
Number of Sequences: 27780
Number of extensions: 315757
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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