Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7a01
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   2.7  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    26   4.8  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   6.3  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   6.3  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   6.3  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   8.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   8.4  

>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 529 DGVLHYYDSEIREVVKLQEST 591
           +G+L++YD++ RE++K   +T
Sbjct: 158 NGILYFYDTQTRELIKFLTNT 178


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 209 AHHQIRYSLPRRRKVLARL*LPCSILLPFETPENLAAHLRAPR 81
           AH +   ++P  R  LA   +P SI +PF   E  AA + AP+
Sbjct: 187 AHERFLGNVPESRPGLASGHIPTSINIPF--TETTAAGITAPK 227


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 15  RRQIANFENCNLYFS 59
           +R +   ENCNLYF+
Sbjct: 376 QRNVTTMENCNLYFN 390


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 175 EGKYWHDYNYHAVFYYRSKHLKIWQLICAP 86
           E +YW   ++  +   R  H ++W L   P
Sbjct: 641 EVRYWDGKSFDLILKLRGHHSEVWALAVGP 670


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 181 HEEGKYWHDYNYHAVFYYRSKHLK 110
           + EGK++   +YH  F  R KH K
Sbjct: 299 YREGKFYCHLDYHEQFSPRCKHCK 322


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 452 DSIVWPKIRPKYHYMMSRKFHMVMLMMESFI 544
           DS+ W K+  +Y    S   + + L+M  +I
Sbjct: 30  DSVEWDKVSDRYSIPFSLAVNFIFLLMRIYI 60


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 537 DSIISITMWNFLDII**YFGLILGHTIESTFKDVVVFCVNL*QFSFCVEVVHFECD 370
           D I  I + NF+ +I  +FG  +  +   +F ++++ CV +       EV H   D
Sbjct: 371 DGIDKIDVQNFILLILKFFGFAISASDRRSFLNLIMSCVMVSIQQSSAEVGHSTSD 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,916
Number of Sequences: 5004
Number of extensions: 46480
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)