Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7a01
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0441 - 3305319-3305894                                           29   2.8  
02_03_0106 + 15292869-15296138                                         28   6.5  
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431...    27   8.6  

>01_01_0441 - 3305319-3305894
          Length = 191

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 181 HEEGKYWHDYNYHAVFYYRSKHLKIWQLICAP 86
           H+EGK W D++Y+ V  Y +  L     IC P
Sbjct: 159 HDEGKRWADHDYYNVM-YATGPLAFRPAICPP 189


>02_03_0106 + 15292869-15296138
          Length = 1089

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 493  IVIFWSYLGPYYRIYLQRRRSFLC--ELVTVLLLCRGC 386
            ++IFWS   P +   L R+R  LC  EL   L L R C
Sbjct: 1008 LIIFWSIAFPRWLELLIRKRDGLCHFELQCSLSLLRSC 1045


>03_01_0581 +
           4310136-4310186,4310940-4311144,4311245-4311410,
           4312035-4312257,4312891-4312967,4313091-4313278,
           4313363-4313457,4313674-4313807,4313914-4314024,
           4314304-4314619,4314919-4315040,4315183-4315293,
           4315824-4316012,4316105-4316263,4316449-4316530,
           4317080-4317190
          Length = 779

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 493 IVIFWSYLGPYYRIYLQRRR 434
           IV F  +LGPYY + + RRR
Sbjct: 84  IVGFIKFLGPYYMVLITRRR 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,105
Number of Sequences: 37544
Number of extensions: 263503
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)