Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6p21
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 86 4e-18
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 33 0.040
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 30 0.37
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 28 1.5
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 28 1.5
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 27 3.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 4.5
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 26 4.5
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.5
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 7.9
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 86.2 bits (204), Expect = 4e-18
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 5/185 (2%)
Frame = +1
Query: 154 KELPIFLSKEVTYKTK-ASVLVPLCIENDQVCLLYTLRSSNLSNHSGQVSFPGGKMDKNE 330
K P K T+ ASVL+PL + LL T RS NL +H+GQ+ FPGG+++ ++
Sbjct: 100 KNRPTLPLKPTNQPTRFASVLMPLVNTSQGASLLLTQRSPNLRSHAGQMCFPGGRVEPSD 159
Query: 331 -DVYETALRETEEEIGISREHIDIWSKMPQVQGRDRNIAITPVIGLLRNYHRDNLRPNLG 507
Y ALRET EEIG + P + RD I + +L G
Sbjct: 160 GSHYYAALRETYEEIGFLPNFFTYLTTFPPLFTRDEKTEIRAYLAFSVQTSLPSL--GTG 217
Query: 508 EVEEIFTVPMKTFCDVNNHAHLEY---DGIIIPVFLNEKHKIWGITGMITHLFLSCFLPE 678
EV+++F VP+ +F + + + D + + +++ +IWGIT +I +++L+ P+
Sbjct: 218 EVKDLFYVPLTSFLNPKHQKISRFRNTDLLYVEFNIDKIPRIWGITAVILNMYLNSICPD 277
Query: 679 KLYNV 693
L ++
Sbjct: 278 ALISI 282
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 33.1 bits (72), Expect = 0.040
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Frame = +1
Query: 190 YKTKASVLVPLCIEND-QVCLLYTLRSSNLSNHSGQVSFPGGKMDKNEDVYETALRETEE 366
YKT+ V + ++ Q C+L ++ S+ G FP GK+DK+E + A+RE E
Sbjct: 92 YKTRIPVRGAIMLDMSMQQCVL--VKGWKASSGWG---FPKGKIDKDESDVDCAIREVYE 146
Query: 367 EIGI---SREHIDIWSKMPQVQGRDRNIAITPVIGLLRNYHRDNLRPNLGEVEEIFTVPM 537
E G SR + + + M ++G++ + I P I L + R + ++E + +
Sbjct: 147 ETGFDCSSRINPNEFIDM-TIRGQNVRLYIIPGISLDTRF-ESRTRKEISKIEWHNLMDL 204
Query: 538 KTF 546
TF
Sbjct: 205 PTF 207
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 29.9 bits (64), Expect = 0.37
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +1
Query: 217 PLCIENDQVCLLYTLRSS--NLSNHSGQVSFPGG--KMDKNEDVYETALRETEEEIGIS- 381
P CI V + ++ S + SG ++ PGG + D+ +TA RET EE+GI
Sbjct: 50 PQCIPITSVPYVLLIQRSFRDTDRWSGHMALPGGTRSLTDKSDI-QTAHRETLEEVGIDL 108
Query: 382 -REH 390
+EH
Sbjct: 109 RKEH 112
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +1
Query: 127 TRSICISKLKELPIFLSKEVTYKTKASVLVPLCIENDQVCLLYTLRSSNLSNHSGQVSFP 306
T S C +++ + + + ++ P E DQ+C + R S L + +
Sbjct: 77 TESACRNQIISIMRVYEQRLAHRQPGMKTTPEEDELDQLCDEWKARLSELQQYREKFLVG 136
Query: 307 GGKMDKNEDVYETALRETEEE 369
K D N+++ E + TEE+
Sbjct: 137 KRKCDCNDEINERLKKLTEEQ 157
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 1.5
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Frame = +1
Query: 295 VSFPGGKMDKNEDVYETALRETEEEIGISREHIDIWSKMPQVQG-RDRNIAITPVIGLLR 471
+ P G +D E + A+RE EE G +D + M G + N+ I +
Sbjct: 85 IEIPAGLVDSKESCEDAAIRELREETGYVGTVMDSTTVMYNDPGLTNANLKIILADIDMS 144
Query: 472 NYHRDNLRPNLGEVEEIFTVPMKTFCDVNNHAHLEYDGIIIPVFLN 609
N + L + E I P+K LE G I V L+
Sbjct: 145 KPENQNPQQQLDDGEYIENFPIKLSSLQEELFSLEKKGFAIDVRLS 190
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 268 SNLSNHSGQVSFPGGKMDKNEDVYETALRETEEEIGISREHID 396
+++S+ S F ++NED YETA E+ + ++RE++D
Sbjct: 41 ASISSESEFNGFEDEIDEENEDTYETA---AEKRLRLAREYLD 80
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 4.5
Identities = 24/107 (22%), Positives = 45/107 (42%)
Frame = +1
Query: 148 KLKELPIFLSKEVTYKTKASVLVPLCIENDQVCLLYTLRSSNLSNHSGQVSFPGGKMDKN 327
K +L + + +V+ PL ++ + S S ++ FP ++D
Sbjct: 1385 KFGDLLVSNNLQVSIDEATQTDFPLVFSPERSSIDINASSMRSEKASFEIPFPEEQID-- 1442
Query: 328 EDVYETALRETEEEIGISREHIDIWSKMPQVQGRDRNIAITPVIGLL 468
+DV A + EE+ IS + ID+ S M Q I +T ++ +
Sbjct: 1443 DDVSPVAQDSSLEELLISLDIIDLTSVMRSCQTIASEIELTGLLSTM 1489
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 262 RSSNLSNHSGQ-VSFPGGKMDKNEDVYETALRETEEEIG 375
+ N S+ G+ + PG K + E + E +RETEE+ G
Sbjct: 89 KDQNNSSEWGEFLHLPGQKFFEFEKIREEIVRETEEKTG 127
>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 161
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 124 VTRSICISKLKELPIFLSKEVTYKTKASVLVPLC 225
V+R+ + E P S+E+ Y+TK VP C
Sbjct: 83 VSRNALFHLIMESPTEFSEELEYQTKPHPTVPTC 116
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 SICIS-KLKELPIFLSKEVTYKTKASVLVPLCIENDQVCLL 252
S C S K KE+ L E Y S++ L EN+ VC L
Sbjct: 1005 SACFSLKAKEIFCSLQNEDFYSELQSIIKCLTNENEPVCYL 1045
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,003
Number of Sequences: 5004
Number of extensions: 61794
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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