Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6p21
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55855-1|AAA98017.1|  188|Caenorhabditis elegans Nudix family pr...    97   8e-21
AL110500-14|CAB54476.1|  234|Caenorhabditis elegans Hypothetical...    71   8e-13
Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AF047663-4|AAY86320.1|  107|Caenorhabditis elegans Hypothetical ...    31   0.80 
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z66513-6|CAA91335.1|  565|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z82282-9|CAB05281.2|  361|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical pr...    27   9.8  
DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping...    27   9.8  
AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U55855-1|AAA98017.1|  188|Caenorhabditis elegans Nudix family
           protein 3 protein.
          Length = 188

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
 Frame = +1

Query: 205 SVLVPLCIENDQVCLLYTLRSSNLSNHSGQVSFPGGKMDKNEDVYETALRETEEEIGISR 384
           SVL+PL   + +  +L T RS +L +H G+V FPGG+MD  E   ETALRET EEIG++ 
Sbjct: 2   SVLIPLVTVDGRDSVLLTKRSIHLRSHRGEVCFPGGRMDPGETTTETALRETFEEIGVNA 61

Query: 385 EHIDIWSKMPQVQGRDRNIAITPVIGLLRNYH-RDNLRPNLGEVEEIFTVPM 537
           E ++IW  +  V  R  +  +TP++G + +    +NL  N  EV+ +FT+P+
Sbjct: 62  ESVEIWGHLKSVIRRQADFNVTPIVGYISDERVLENLVVNSDEVQAVFTIPI 113


>AL110500-14|CAB54476.1|  234|Caenorhabditis elegans Hypothetical
           protein Y87G2A.14 protein.
          Length = 234

 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 6/173 (3%)
 Frame = +1

Query: 202 ASVLVPLCIE-NDQVCLLYTLRSSNLSNHSGQVSFPGGKMD--KNEDVYETALRETEEEI 372
           A VL+ L  + ++++ +L  +RS  L  H G+V FPGG MD    ++V  TA+RE  EE+
Sbjct: 30  AGVLILLHDDGSEKLKVLLCVRSRQLRRHPGEVCFPGGMMDDEDGQNVRRTAIREAYEEV 89

Query: 373 GIS-REHIDIWSKMPQVQGRDRNIAITPVIGLLRNYHRDNLRPNLGEVEEIFTVPMKTFC 549
           G++  +   +   +P  + R   + I P + LLR      L  ++GEVE IF +P+  F 
Sbjct: 90  GVNENDDYLVLGNLPAFRAR-FGVLIHPTVALLRRPPTFVL--SIGEVESIFWIPLSQFL 146

Query: 550 DVNNHAHLEYDGI-IIPVF-LNEKHKIWGITGMITHLFLSCFLPEKLYNVNFM 702
           +  +H+    D   ++ VF  +E    +G+T ++  + ++  L  KL N N M
Sbjct: 147 EDTHHSTFLIDEFYMVHVFQFDEYPTTYGVTALMC-IVVAIGLLGKLPNFNLM 198


>Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical
           protein K07C5.2 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
 Frame = +1

Query: 355 ETEEEIGISREHIDIWSKMPQVQ--GRDRNIAIT--PVIGLLRNYHRDNLRPNLGEVE-- 516
           + + EI  SR  I +W  + + +  GR R+I ++   V  L+  +    +RP L + E  
Sbjct: 130 DDDYEINKSRRKI-VWQTLEKAKESGRVRSIGVSNYEVYHLVEMFEYAKIRPVLNQYEYQ 188

Query: 517 EIFTVP-MKTFCDVNNHAHLEYDGI 588
              T P +K FCD+NN     Y  +
Sbjct: 189 PYLTRPTLKKFCDLNNIVVQSYSSL 213


>AF047663-4|AAY86320.1|  107|Caenorhabditis elegans Hypothetical
           protein W09G12.10 protein.
          Length = 107

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -3

Query: 458 ITGVIAIFLSRPWT*GILLQISMCSRDIPISSSVSRKAVS*TSS 327
           +TG++ +F+   ++ GIL  + M +RD P +S    K+ S +SS
Sbjct: 56  MTGLVGVFIVFIYSAGILAVLYMVARDYPEASDFDNKSASSSSS 99


>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
            C50C3.2 protein.
          Length = 2107

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +2

Query: 314  KWIKMKMFMRLLYGKLKRKLEY--LVNTSIFGVKCLKSR 424
            KW+KM   ++ ++ K+K  +E+   V+T   G++C++ +
Sbjct: 1620 KWLKMNEELKKMHQKIKESIEFTKFVSTCDTGIQCIREQ 1658


>Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical
           protein ZK809.5b protein.
          Length = 708

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 310 GKMDKNEDVYETALRETEEEIGISREHI 393
           G++ K  DV  T+L ET EE+ +SR  +
Sbjct: 278 GQIQKELDVTMTSLNETREELAVSRVEV 305


>Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical
           protein ZK809.5a protein.
          Length = 706

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 310 GKMDKNEDVYETALRETEEEIGISREHI 393
           G++ K  DV  T+L ET EE+ +SR  +
Sbjct: 276 GQIQKELDVTMTSLNETREELAVSRVEV 303


>U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical
           protein F53B3.1 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 319 DKNEDVYETALRETEEEIGISR 384
           DK+ D+YE  +RE EEE+ + R
Sbjct: 239 DKHPDLYEEYIREQEEEVELQR 260


>Z66513-6|CAA91335.1|  565|Caenorhabditis elegans Hypothetical
           protein F54D5.9 protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 316 MDKNEDVYETALRETEEEIGISREHIDIWSKMP 414
           +D   D YET   E  E + + R H+  WS  P
Sbjct: 425 LDPRRDDYETLQNEAAEMVCLVRNHLYRWSAAP 457


>U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical
           protein C26E6.3 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -1

Query: 355 PVKQSHKHLHFYPFYHQEKKLVRCDCSN*TILEYITGKL---GRFQYIMVLKQRLWFYTL 185
           P   +H  L+ YPF H  K     +    T L  I   +    + Q ++V+   L    +
Sbjct: 117 PFLHAHIPLYLYPFLHTTKVSRSFEYLRLTSLGVIGALVKTDDKEQLLIVINFLLSTEII 176

Query: 184 PLCLKILE 161
           PLCL+I+E
Sbjct: 177 PLCLRIME 184


>Z82282-9|CAB05281.2|  361|Caenorhabditis elegans Hypothetical
           protein T07G12.12 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 250 LYTLRSSNLSNHSGQVSFPGGKMDKNEDVYETALRETEEEIGISRE 387
           LY   + NLS    ++    G  D+NED+ E+  +E EEE+  S E
Sbjct: 72  LYQKFTLNLSEKISEI----GPNDENEDLKESYDQEPEEELNSSHE 113


>Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 301 FPGGKMDKNEDVYETALRETEEEIG 375
           FP GK+++ E   + A+RET EE G
Sbjct: 270 FPKGKINQAEPPRDAAIRETFEETG 294


>Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 301 FPGGKMDKNEDVYETALRETEEEIG 375
           FP GK+++ E   + A+RET EE G
Sbjct: 293 FPKGKINQAEPPRDAAIRETFEETG 317


>DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping
           protein protein.
          Length = 770

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 301 FPGGKMDKNEDVYETALRETEEEIG 375
           FP GK+++ E   + A+RET EE G
Sbjct: 254 FPKGKINQAEPPRDAAIRETFEETG 278


>AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 301 FPGGKMDKNEDVYETALRETEEEIG 375
           FP GK+++ E   + A+RET EE G
Sbjct: 270 FPKGKINQAEPPRDAAIRETFEETG 294


>AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 301 FPGGKMDKNEDVYETALRETEEEIG 375
           FP GK+++ E   + A+RET EE G
Sbjct: 293 FPKGKINQAEPPRDAAIRETFEETG 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,315,797
Number of Sequences: 27780
Number of extensions: 328520
Number of successful extensions: 831
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)