Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6p21
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.92 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.8  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   8.6  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   8.6  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   8.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 355 PVKQSHKHLHFYPFYHQE 302
           P+ QSH HLH +   +Q+
Sbjct: 68  PIYQSHHHLHHHQVLYQQ 85


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 388 HIDIWSKMPQVQGRDRNIAITPVIGLLRNYHRDNLRPNLG 507
           H+  W+ +      DR   +T  I  + + +   LRPN G
Sbjct: 18  HLIAWASLENTGISDRLENVTQTISRILDGYDIRLRPNFG 57


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 628 GITGMITHLFLSCFLPEKLYN 690
           G+T   +H  LSC   +K Y+
Sbjct: 77  GLTNTASHTRLSCDCDDKFYD 97


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 628 GITGMITHLFLSCFLPEKLYN 690
           G+T   +H  LSC   +K Y+
Sbjct: 82  GLTNTASHTRLSCDCDDKFYD 102


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 628 GITGMITHLFLSCFLPEKLYN 690
           G+T   +H  LSC   +K Y+
Sbjct: 82  GLTNTASHTRLSCDCDDKFYD 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,039
Number of Sequences: 438
Number of extensions: 4835
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)