Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt6p19
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   1.3  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    24   2.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    23   4.1  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    23   5.4  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    23   5.4  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    23   7.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    23   7.1  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    22   9.4  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    22   9.4  

>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 44  NKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSM 184
           N+  L   +CF H+  +S+G  ++  R+       + W   P+D S+
Sbjct: 195 NREALICSHCFHHNGLASYGEKASDVRYVCLF--CKAWNGPPIDKSL 239


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 92  SSFGCPSTCHRWCRRLGRLEQWRSQPLDTSMDRIRSLVPAVGSL 223
           ++FG  S C RWC RL   E  R+     S D +R +  A  +L
Sbjct: 274 AAFGA-SACTRWCSRLAFKECGRA---TQSTDLVRHVGKAYNAL 313


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 35  HFINKNGLESDYCFMHHASSSFGCPSTCHRW 127
           H+I K+G  S+    H+ S      + CHR+
Sbjct: 92  HYIRKHGPLSEREAAHYLSQILDAVAHCHRF 122


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 41  INKNGLESDYCFMHHASSS 97
           +N+NGL  +  F+HH   S
Sbjct: 561 LNQNGLRMESSFIHHEHPS 579


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 62  SDYCFMHHASSSFGCPSTC 118
           +DYC   H   +F C  TC
Sbjct: 263 NDYCSACHGPGNFLCCETC 281


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 59  ESDYCFMHHASSSF 100
           ESD C+  +ASSSF
Sbjct: 128 ESDSCYFGNASSSF 141


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 92   SSFGCPSTCHRWCRRLGRLEQWRSQPLDT 178
            S++ CP  C   C + G+L  W ++P  T
Sbjct: 1495 SNYACPD-C---CSKEGKLYPWNTRPRST 1519


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 119 GRLRDSRSYC 90
           G LRDSR YC
Sbjct: 242 GELRDSRHYC 251


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 53  GLESDYCFMHHASSSFGCPST 115
           GLE +   ++H+S S G P +
Sbjct: 157 GLEPEVALINHSSGSTGVPKS 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 901,401
Number of Sequences: 5004
Number of extensions: 13985
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)