Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6p19
(235 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0350 + 16899076-16900164 28 1.2
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802 27 1.6
10_08_0115 + 14924463-14924939 27 2.1
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333... 27 2.1
07_03_0388 + 17550034-17550267 26 3.7
12_01_0604 - 4949977-4950327 26 4.9
04_04_0069 + 22506885-22508354 26 4.9
12_02_1095 - 26036283-26036481,26036582-26036772,26037069-260381... 25 6.5
10_05_0017 + 8037822-8038211 25 6.5
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 25 6.5
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 25 6.5
01_02_0075 + 10873789-10873871,10873883-10874420 25 6.5
08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622 25 8.6
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72... 25 8.6
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 25 8.6
05_02_0110 + 6702828-6703065,6703145-6703351,6703536-6703684,670... 25 8.6
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 25 8.6
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/41 (51%), Positives = 22/41 (53%)
Frame = -3
Query: 224 ARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDS 102
AR P V SG + WR R D A AS TAG GGR R S
Sbjct: 71 ARRPWLV-SSGAEAWRR-RGDAASA-ASATAGGAGGRSRRS 108
>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
Length = 320
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 221 RSPLRVPGSGCDPWRYPRVDCAIVPASPTAG 129
R P ++P P+ +PR D A+ P+SP G
Sbjct: 40 RQPAKIPA----PFVWPRADVALPPSSPPTG 66
>10_08_0115 + 14924463-14924939
Length = 158
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 155 WRSQPLDTSMDRIRSLVPAVGSLH 226
WR PL +D LVPA S H
Sbjct: 33 WRGVPLSIGVDAASPLVPATASTH 56
>01_06_1227 +
35531840-35532516,35532665-35532836,35533158-35533357,
35533467-35533622,35536878-35537235,35537407-35537418
Length = 524
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 113 TCHRWCRRLGRLEQWRSQPLDTSMDR 190
TC R RR ++WR QP D SM R
Sbjct: 201 TCMRNGRRDDTYQKWRWQPKDCSMPR 226
>07_03_0388 + 17550034-17550267
Length = 77
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -2
Query: 234 RWWCKEPTAGT--RERMRSMEVSKG*LRHCSSLPNRRHHRWQVEG 106
RW + AG+ RER + EVS+ R ++ P R H R + G
Sbjct: 11 RWRLGQVDAGSEGRERQQCGEVSRPGYRRVATAPLRCHRRESLSG 55
>12_01_0604 - 4949977-4950327
Length = 116
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 83 HASSSFGCPSTCHRWCRRLG 142
HA SF + C RWC R G
Sbjct: 27 HAIISFTRAAACDRWCVRFG 46
>04_04_0069 + 22506885-22508354
Length = 489
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/41 (51%), Positives = 22/41 (53%)
Frame = -3
Query: 224 ARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDS 102
AR P V G G + R R D A PAS TAG GGR R S
Sbjct: 82 ARRPWLV-GGGAEASRR-RGDAAS-PASATAGGAGGRSRRS 119
>12_02_1095 -
26036283-26036481,26036582-26036772,26037069-26038198,
26038275-26038431,26038595-26038670,26038744-26038866,
26038950-26039114,26039208-26039298,26039622-26039706,
26039793-26039948,26040045-26040101,26040179-26040277,
26040523-26040635,26041022-26041079
Length = 899
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 212 LRVPGSGCDPWRYPRVDCAIVPASP 138
L G G PW PR+D ++ P
Sbjct: 419 LNFQGHGVSPWLQPRIDSPLLGLKP 443
>10_05_0017 + 8037822-8038211
Length = 129
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 11 RVNFERNLHFINKNGLE 61
RVN +R+ H +NK GLE
Sbjct: 89 RVNAKRSRHHLNKEGLE 105
>04_01_0085 -
932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 227 GARSPLRVPGSGCDPWRYPRVDC 159
G S R+P G D R P+VDC
Sbjct: 876 GCWSLTRLPAVGLDSTRKPKVDC 898
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 227 GARSPLRVPGSGCDPWRYPRVDC 159
G S R+P G D R P+VDC
Sbjct: 1029 GCWSLTRLPAVGLDSTRKPKVDC 1051
>01_02_0075 + 10873789-10873871,10873883-10874420
Length = 206
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 233 DGGARSPLRVPGSGCDPWRYPRVDCA 156
DGG R V +G D WR P D A
Sbjct: 10 DGGRRRLSGVEAAGSDGWRRPLPDLA 35
>08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622
Length = 349
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +2
Query: 143 RLEQWRSQPLDTSMDRIRSLVPAVGSLHH 229
R +W+++ L+ DR+++ A+ + HH
Sbjct: 134 RRARWKTKQLEHDFDRLKAAYDALAADHH 162
>08_01_0101 +
725972-726200,726407-726675,726927-727049,727742-728248
Length = 375
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 83 HASSSFGCPSTCHRW 127
H++SS C CHRW
Sbjct: 311 HSTSSRVCSRVCHRW 325
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 182 WRYPRVDCAIVPASPTAGTTGGRLRDSRS 96
+ PR+D +PA PTA G L RS
Sbjct: 48 YELPRIDPVDLPAIPTAQPVSGPLVPGRS 76
>05_02_0110 +
6702828-6703065,6703145-6703351,6703536-6703684,
6704096-6704369,6706011-6706228
Length = 361
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 155 WRSQPLDTSMDRIRSLVPAV 214
W + PLDT + R L+P+V
Sbjct: 126 WNNGPLDTQIQWFRQLLPSV 145
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 212 LRVPGSGCDPWRYPRVDCAIVPASP 138
L G G PW PR+D +++ P
Sbjct: 417 LNFGGLGMSPWMQPRLDSSLLGLQP 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,664,946
Number of Sequences: 37544
Number of extensions: 125345
Number of successful extensions: 517
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -