Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt6p19
(235 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 27 0.023
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 23 0.49
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 0.86
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 19 6.0
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 19 6.0
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 19 6.0
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 19 6.0
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 19 6.0
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 19 6.0
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 19 6.0
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 19 8.0
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 19 8.0
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 19 8.0
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 27.5 bits (58), Expect = 0.023
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 20 FERNLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQ---WRSQPLDTSMDR 190
FE ++ +NK+ + +MH + C R C RLGR+++ W + +
Sbjct: 218 FEGDIRIVNKDRRGELFYYMHQQIMA---RYNCERLCNRLGRVKRFINWHEPIPEAYFPK 274
Query: 191 IRSLV 205
+ SLV
Sbjct: 275 LDSLV 279
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 23.0 bits (47), Expect = 0.49
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 179 RYPRVDCAIVPASPTAGTTGG 117
++P + CA P+S TT G
Sbjct: 345 KFPSLACAAEPSSDAVSTTSG 365
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 22.2 bits (45), Expect = 0.86
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Frame = +2
Query: 86 ASSSFGCPST-----CHR----WCRRLGRLEQWRSQPLDTSMDRIRS 199
AS++FG PST HR ++ G + W + L+ ++D +R+
Sbjct: 433 ASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRT 479
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 19.4 bits (38), Expect = 6.0
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = +2
Query: 23 ERNLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSMDRI 193
E + + N L S H SS + +C R R R + R + L +++
Sbjct: 206 ESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKDRRYEKLHNEKEKL 262
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.4 bits (38), Expect = 6.0
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = +2
Query: 23 ERNLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSMDRI 193
E + + N L S H SS + +C R R R + R + L +++
Sbjct: 206 ESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKL 262
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.4 bits (38), Expect = 6.0
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = +2
Query: 23 ERNLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSMDRI 193
E + + N L S H SS + +C R R R + R + L +++
Sbjct: 206 ESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKL 262
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.4 bits (38), Expect = 6.0
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = +2
Query: 23 ERNLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSMDRI 193
E + + N L S H SS + +C R R R + R + L +++
Sbjct: 206 ESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKL 262
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.4 bits (38), Expect = 6.0
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = +2
Query: 23 ERNLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSMDRI 193
E + + N L S H SS + +C R R R + R + L +++
Sbjct: 206 ESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKL 262
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 19.4 bits (38), Expect = 6.0
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = +2
Query: 23 ERNLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSMDRI 193
E + + N L S H SS + +C R R R + R + L +++
Sbjct: 195 ESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKKDRRYEKLHNEKEKL 251
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 19.4 bits (38), Expect = 6.0
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = +2
Query: 23 ERNLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSMDRI 193
E + + N L S H SS + +C R R R + R + L +++
Sbjct: 206 ESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKDRRYEKLHNEKEKL 262
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 19.0 bits (37), Expect = 8.0
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +1
Query: 142 EAGTMAQSTLGYLHG 186
++ ++A++ GY+HG
Sbjct: 233 QSDSLAENVEGYVHG 247
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.0 bits (37), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 158 RSQPLDTSMDRIRSLVPAVGSLH 226
R+ PLD S+ + AV S+H
Sbjct: 149 RTNPLDDSISQANEGFCAVISMH 171
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 19.0 bits (37), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 158 RSQPLDTSMDRIRSLVPAVGSLH 226
R+ PLD S+ + AV S+H
Sbjct: 144 RTNPLDDSISQANEGFCAVISMH 166
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,807
Number of Sequences: 438
Number of extensions: 1066
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 3772710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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